ENSDARG00000039093


Danio rerio

Features
Gene ID: ENSDARG00000039093
  
Biological name :got1
  
Synonyms : glutamic-oxaloacetic transaminase 1, soluble / got1
  
Possible biological names infered from orthology : glutamic-oxaloacetic transaminase 1 / P05201 / P17174
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 40437550
Gene end: 40456995
  
Corresponding Affymetrix probe sets: Dr.25552.1.S1_at (Zebrafish Array)   NM_213057_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000057089
Ensembl peptide - ENSDARP00000129948
NCBI entrez gene - 406330     See in Manteia.
RefSeq - NM_213057
RefSeq Peptide - NP_998222
swissprot - F1QMC6
swissprot - Q7ZUW8
ZFIN ID - ZDB-GENE-040426-2003
Ensembl - ENSDARG00000039093
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GOT1ENSGALG00000007484Gallus gallus
 GOT1ENSG00000120053Homo sapiens
 Got1ENSMUSG00000025190Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
got2a / glutamic-oxaloacetic transaminase 2a, mitochondrial / GOT2* / P00505* / P05202* / glutamic-oxaloacetic transaminase 2* / glutamatic-oxaloacetic transaminase 2, mitochondrial*ENSDARG0000004106847
got2b / glutamic-oxaloacetic transaminase 2b, mitochondrial / GOT2* / P00505* / P05202* / glutamic-oxaloacetic transaminase 2* / glutamatic-oxaloacetic transaminase 2, mitochondrial*ENSDARG0000000584045
got1l1 / glutamic-oxaloacetic transaminase 1 like 1 / Q7TSV6* / Q8NHS2*ENSDARG0000005364443


Protein motifs (from Interpro)
Interpro ID Name
 IPR000796  Aspartate/other aminotransferase
 IPR004838  Aminotransferases, class-I, pyridoxal-phosphate-binding site
 IPR004839  Aminotransferase, class I/classII
 IPR015422  Pyridoxal phosphate-dependent transferase domain 1
 IPR015424  Pyridoxal phosphate-dependent transferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006520 cellular amino acid metabolic process IEA
 biological_processGO:0009058 biosynthetic process IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity IEA
 molecular_functionGO:0008483 transaminase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0030170 pyridoxal phosphate binding IEA


Pathways (from Reactome)
Pathway description
Gluconeogenesis
Amino acid synthesis and interconversion (transamination)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000039093 got1 / glutamic-oxaloacetic transaminase 1, soluble / P05201* / P17174* / glutamic-oxaloacetic transaminase 1*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr