ENSDARG00000039613


Danio rerio

Features
Gene ID: ENSDARG00000039613
  
Biological name :poll
  
Synonyms : poll / polymerase (DNA directed), lambda
  
Possible biological names infered from orthology : DNA polymerase lambda / Q9QXE2 / Q9UGP5
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 31657842
Gene end: 31672343
  
Corresponding Affymetrix probe sets: Dr.6031.1.A1_at (Zebrafish Array)   Dr.6031.2.A1_at (Zebrafish Array)   NM_213243_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000150421
Ensembl peptide - ENSDARP00000057879
NCBI entrez gene - 406697     See in Manteia.
RefSeq - NM_213243
RefSeq Peptide - NP_998408
swissprot - B8JIE9
ZFIN ID - ZDB-GENE-040426-2712
Ensembl - ENSDARG00000039613
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLLENSGALG00000007753Gallus gallus
 POLLENSG00000166169Homo sapiens
 PollENSMUSG00000025218Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
polm / polymerase (DNA directed), mu / Q9JIW4* / Q9NP87* / DNA polymerase mu*ENSDARG0000010347022
dntt / deoxynucleotidyltransferase, terminal / P04053* / DNA nucleotidylexotransferase*ENSDARG0000010479221
polb / polymerase (DNA directed), beta / P06746* / Q8K409* / DNA polymerase beta*ENSDARG0000000374920


Protein motifs (from Interpro)
Interpro ID Name
 IPR001357  BRCT domain
 IPR001726  DNA nucleotidylexotransferase (TdT) / DNA-directed DNA/RNA polymerase mu
 IPR002008  DNA polymerase family X, beta-like
 IPR002054  DNA-directed DNA polymerase X
 IPR010996  DNA polymerase beta-like, N-terminal domain
 IPR018944  DNA polymerase lambda, fingers domain
 IPR019843  DNA polymerase family X, binding site
 IPR022312  DNA polymerase family X
 IPR028207  DNA polymerase beta, palm domain
 IPR029398  DNA polymerase beta, thumb domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006259 DNA metabolic process IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0071897 DNA biosynthetic process IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003887 DNA-directed DNA polymerase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0034061 DNA polymerase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nonhomologous End-Joining (NHEJ)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr