ENSGALG00000007753


Gallus gallus

Features
Gene ID: ENSGALG00000007753
  
Biological name :POLL
  
Synonyms : DNA polymerase lambda / POLL
  
Possible biological names infered from orthology : polymerase (DNA directed), lambda / Q9QXE2 / Q9UGP5
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 22793221
Gene end: 22811866
  
Corresponding Affymetrix probe sets: Gga.18956.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000012558
Ensembl peptide - ENSGALP00000063438
NCBI entrez gene - 423853     See in Manteia.
RefSeq - XM_015288782
RefSeq - XM_015288780
RefSeq - XM_015288781
RefSeq - XM_004942210
RefSeq - XM_004942211
RefSeq - XM_004942212
RefSeq - XM_015288775
RefSeq - XM_015288776
RefSeq - XM_015288777
RefSeq - XM_015288778
RefSeq - XM_015288779
swissprot - Q5ZKZ0
swissprot - F7B5D1
Ensembl - ENSGALG00000007753
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pollENSDARG00000039613Danio rerio
 POLLENSG00000166169Homo sapiens
 PollENSMUSG00000025218Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DNTT / DNA nucleotidylexotransferase / P04053* / P09838*ENSGALG0000000698319


Protein motifs (from Interpro)
Interpro ID Name
 IPR001357  BRCT domain
 IPR002008  DNA polymerase family X, beta-like
 IPR002054  DNA-directed DNA polymerase X
 IPR010996  DNA polymerase beta-like, N-terminal domain
 IPR018944  DNA polymerase lambda, fingers domain
 IPR019843  DNA polymerase family X, binding site
 IPR022312  DNA polymerase family X
 IPR027421  DNA polymerase lambda lyase domain superfamily
 IPR028207  DNA polymerase beta, palm domain
 IPR029398  DNA polymerase beta, thumb domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000724 double-strand break repair via homologous recombination IEA
 biological_processGO:0006259 DNA metabolic process IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006287 base-excision repair, gap-filling IEA
 biological_processGO:0006289 nucleotide-excision repair IEA
 biological_processGO:0006303 double-strand break repair via nonhomologous end joining IEA
 biological_processGO:0071897 DNA biosynthetic process IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003887 DNA-directed DNA polymerase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0034061 DNA polymerase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051575 5"-deoxyribose-5-phosphate lyase activity IEA


Pathways (from Reactome)
Pathway description
Nonhomologous End-Joining (NHEJ)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000011492 XRCC5 / X-ray repair cross complementing 5 / P13010* / P27641* / X-ray repair complementing defective repair in Chinese hamster cells 5*  / reaction
 ENSGALG00000016854 LIG4 / DNA ligase 4 / P49917* / Q8BTF7* / ligase IV, DNA, ATP-dependent*  / reaction
 ENSGALG00000015620 XRCC4 / X-ray repair cross complementing 4 / Q13426* / X-ray repair complementing defective repair in Chinese hamster cells 4*  / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr