ENSDARG00000040535


Danio rerio

Features
Gene ID: ENSDARG00000040535
  
Biological name :csgalnact1a
  
Synonyms : chondroitin sulfate N-acetylgalactosaminyltransferase 1a / csgalnact1a
  
Possible biological names infered from orthology : chondroitin sulfate N-acetylgalactosaminyltransferase 1 / CSGALNACT1 / Q8BJQ9 / Q8TDX6
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 8298984
Gene end: 8358396
  
Corresponding Affymetrix probe sets: Dr.17613.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000059321
NCBI entrez gene - 793671     See in Manteia.
swissprot - E7F6G2
ZFIN ID - ZDB-GENE-121129-1
Ensembl - ENSDARG00000040535
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CSGALNACT1ENSGALG00000010125Gallus gallus
 Q8TDX6ENSG00000147408Homo sapiens
 Q8BJQ9ENSMUSG00000036356Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
csgalnact2 / chondroitin sulfate N-acetylgalactosaminyltransferase 2 / Q8C1F4* / Q8N6G5*ENSDARG0000006140054
csgalnact1b / chondroitin sulfate N-acetylgalactosaminyltransferase 1b / Q8TDX6* / CSGALNACT1* / chondroitin sulfate N-acetylgalactosaminyltransferase 1*ENSDARG0000008923341
chsy3 / chondroitin sulfate synthase 3 / Q70JA7*ENSDARG0000006947225
chsy1 / chondroitin sulfate synthase 1 / Q6ZQ11* / Q86X52*ENSDARG0000007902725
chpfb / chondroitin polymerizing factor b / CHPF* / Q8IZ52* / Q6IQX7* / chondroitin polymerizing factor* / Chondroitin sulfate synthase 2 *ENSDARG0000007803717
b4galnt4b / beta-1,4-N-acetyl-galactosaminyl transferase 4b / Q76KP1* / Q766D5* / B4GALNT4* / beta-1,4-N-acetyl-galactosaminyltransferase 4* / N-acetyl-beta-glucosaminyl-glycoprotein 4-beta...ENSDARG0000007670117
b4galnt4a / beta-1,4-N-acetyl-galactosaminyl transferase 4a / Q76KP1* / Q766D5* / B4GALNT4* / beta-1,4-N-acetyl-galactosaminyltransferase 4* / N-acetyl-beta-glucosaminyl-glycoprotein 4-beta...ENSDARG0000004615017
chpf2 / chondroitin polymerizing factor 2 / Q9P2E5*ENSDARG0000005996117
chpfa / chondroitin polymerizing factor aENSDARG0000007839216
b4galnt3a / beta-1,4-N-acetyl-galactosaminyl transferase 3a / Q6L9W6* / Q6L8S8* / B4GALNT3* / beta-1,4-N-acetyl-galactosaminyltransferase 3* / Beta-1,4-N-acetylgalactosaminyltransferase 3 *ENSDARG0000007874915
b4galnt3b / beta-1,4-N-acetyl-galactosaminyl transferase 3b / Q6L9W6* / Q6L8S8* / B4GALNT3* / beta-1,4-N-acetyl-galactosaminyltransferase 3* / Beta-1,4-N-acetylgalactosaminyltransferase 3 *ENSDARG0000005893915


Protein motifs (from Interpro)
Interpro ID Name
 IPR008428  Chondroitin N-acetylgalactosaminyltransferase
 IPR029044  Nucleotide-diphospho-sugar transferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015012 heparan sulfate proteoglycan biosynthetic process IGI
 biological_processGO:0050650 chondroitin sulfate proteoglycan biosynthetic process IGI
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0032580 Golgi cisterna membrane IEA
 molecular_functionGO:0008376 acetylgalactosaminyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
Chondroitin sulfate biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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