ENSDARG00000079027


Danio rerio

Features
Gene ID: ENSDARG00000079027
  
Biological name :chsy1
  
Synonyms : chondroitin sulfate synthase 1 / chsy1
  
Possible biological names infered from orthology : Q6ZQ11 / Q86X52
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 9326234
Gene end: 9511298
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000095309
NCBI entrez gene - 324407     See in Manteia.
RefSeq - NM_212678
RefSeq Peptide - NP_997843
swissprot - Q6P296
ZFIN ID - ZDB-GENE-030131-3127
Ensembl - ENSDARG00000079027
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHSY1ENSGALG00000026468Gallus gallus
 CHSY1ENSG00000131873Homo sapiens
 Chsy1ENSMUSG00000032640Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
chsy3 / chondroitin sulfate synthase 3 / Q70JA7*ENSDARG0000006947263
chpfa / chondroitin polymerizing factor aENSDARG0000007839221
chpfb / chondroitin polymerizing factor b / CHPF* / Q8IZ52* / Q6IQX7* / chondroitin polymerizing factor* / Chondroitin sulfate synthase 2 *ENSDARG0000007803721
chpf2 / chondroitin polymerizing factor 2 / Q9P2E5*ENSDARG0000005996120
csgalnact1a / chondroitin sulfate N-acetylgalactosaminyltransferase 1a / Q8TDX6* / CSGALNACT1* / chondroitin sulfate N-acetylgalactosaminyltransferase 1*ENSDARG0000004053518
csgalnact2 / chondroitin sulfate N-acetylgalactosaminyltransferase 2 / Q8C1F4* / Q8N6G5*ENSDARG0000006140017
b4galnt4a / beta-1,4-N-acetyl-galactosaminyl transferase 4a / Q76KP1* / Q766D5* / B4GALNT4* / beta-1,4-N-acetyl-galactosaminyltransferase 4* / N-acetyl-beta-glucosaminyl-glycoprotein 4-beta...ENSDARG0000004615016
b4galnt4b / beta-1,4-N-acetyl-galactosaminyl transferase 4b / Q76KP1* / Q766D5* / B4GALNT4* / beta-1,4-N-acetyl-galactosaminyltransferase 4* / N-acetyl-beta-glucosaminyl-glycoprotein 4-beta...ENSDARG0000007670115
b4galnt3b / beta-1,4-N-acetyl-galactosaminyl transferase 3b / Q6L9W6* / Q6L8S8* / B4GALNT3* / beta-1,4-N-acetyl-galactosaminyltransferase 3* / Beta-1,4-N-acetylgalactosaminyltransferase 3 *ENSDARG0000005893913
csgalnact1b / chondroitin sulfate N-acetylgalactosaminyltransferase 1b / Q8TDX6* / CSGALNACT1* / chondroitin sulfate N-acetylgalactosaminyltransferase 1*ENSDARG0000008923313
b4galnt3a / beta-1,4-N-acetyl-galactosaminyl transferase 3a / Q6L9W6* / Q6L8S8* / B4GALNT3* / beta-1,4-N-acetyl-galactosaminyltransferase 3* / Beta-1,4-N-acetylgalactosaminyltransferase 3 *ENSDARG0000007874912


Protein motifs (from Interpro)
Interpro ID Name
 IPR008428  Chondroitin N-acetylgalactosaminyltransferase
 IPR029044  Nucleotide-diphospho-sugar transferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003007 heart morphogenesis IMP
 biological_processGO:0008593 regulation of Notch signaling pathway IMP
 biological_processGO:0033339 pectoral fin development IMP
 biological_processGO:0050650 chondroitin sulfate proteoglycan biosynthetic process IMP
 biological_processGO:0060041 retina development in camera-type eye IMP
 biological_processGO:0060042 retina morphogenesis in camera-type eye IMP
 biological_processGO:0060536 cartilage morphogenesis IMP
 biological_processGO:0060876 semicircular canal formation IMP
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0032580 Golgi cisterna membrane IEA
 molecular_functionGO:0008376 acetylgalactosaminyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
Chondroitin sulfate biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000024 retinal ganglion cell layer retinal ganglion cell layer hyperplastic , abnormal
Show

 ZFA:0000035 lens lens decreased size , abnormal
Show

 ZFA:0000107 eye eye morphology , abnormal
eye fused with eye , abnormal
Show

 ZFA:0000109 forebrain forebrain medial region aplastic , abnormal
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 ZFA:0000114 heart heart decreased functionality , abnormal
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 ZFA:0000135 notochord notochord degenerate , abnormal
notochord undulate , abnormal
Show

 ZFA:0000137 optic stalk optic stalk morphology , abnormal
Show

 ZFA:0000138 otic placode otic placode decreased size , abnormal
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 ZFA:0000144 retinal pigmented epithelium retinal pigmented epithelium hyperplastic , abnormal
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 ZFA:0000152 retina retina fused with retina , abnormal
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 ZFA:0000257 pectoral fin cartilage pectoral fin cartilage disorganized , abnormal
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 ZFA:0000570 optic primordium optic primordium fused with optic primordium , abnormal
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 ZFA:0001094 whole organism whole organism lacks parts or has fewer parts of type pectoral fin , abnormal
whole organism decreased length , abnormal
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 ZFA:0001114 head head bulbous , abnormal
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 ZFA:0001117 post-vent region post-vent region morphology , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton decreased size , abnormal
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 ZFA:0001273 ventral mandibular arch ventral mandibular arch protruding , abnormal
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 ZFA:0001284 optic fissure optic fissure present , abnormal
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 ZFA:0001315 atrioventricular canal atrioventricular canal aplastic , abnormal
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 ZFA:0001405 ethmoid cartilage ethmoid cartilage deformed , abnormal
ethmoid cartilage malformed , abnormal
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 ZFA:0001456 pectoral fin endoskeletal disc pectoral fin endoskeletal disc hypoplastic , abnormal
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 ZFA:0001507 trabecula cranii trabecula cranii malformed , abnormal
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 ZFA:0005317 pectoral fin fold pectoral fin fold decreased size , abnormal
pectoral fin fold variability of size , abnormal
Show

 ZFA:0005409 pars superior ear pars superior ear morphology , abnormal
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 ZFA:0005491 optic furrow optic furrow open , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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