ENSDARG00000042616


Danio rerio

Features
Gene ID: ENSDARG00000042616
  
Biological name :sema3h
  
Synonyms : sema3h / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 25913787
Gene end: 25951806
  
Corresponding Affymetrix probe sets: Dr.8095.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000062514
Ensembl peptide - ENSDARP00000152344
NCBI entrez gene - 30252     See in Manteia.
RefSeq - NM_131050
RefSeq - NM_001328378
RefSeq Peptide - NP_001315307
RefSeq Peptide - NP_571125
swissprot - Q1LVE1
ZFIN ID - ZDB-GENE-990715-8
Ensembl - ENSDARG00000042616
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sema3b / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B / Q13214* / semaphorin 3B*ENSDARG0000001167244
sema3ab / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab / SEMA3A* / O08665* / Q14563* / semaphorin 3A*ENSDARG0000004221044
sema3aa / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa / SEMA3A* / O08665* / Q14563* / semaphorin 3A*ENSDARG0000001923543
si:dkey-49n23.1ENSDARG0000004092042
sema3bl / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl / Q9NS98* / Q4LFA9* / SEMA3G* / semaphorin 3G*ENSDARG0000000756041
sema3d / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D / O95025* / Q8BH34* / semaphorin 3D*ENSDARG0000001736941
sema3e / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E / O15041* / P70275* / semaphorin 3E*ENSDARG0000003657140
sema3fb / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb / SEMA3F* / O88632* / Q13275* / semaphorin 3F*ENSDARG0000005537339
sema3fa / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa / SEMA3F* / O88632* / Q13275* / semaphorin 3F*ENSDARG0000001116338
sema3ga / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3GaENSDARG0000004254538
sema3c / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C / Q62181* / Q99985* / semaphorin 3C*ENSDARG0000003430037
sema3gb / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3GbENSDARG0000001360737
sema4ga / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ga / SEMA4G* / Q9NTN9* / Q9WUH7* / semaphorin 4G*ENSDARG0000007659529
SEMA4D / semaphorin 4D / Q92854*ENSDARG0000006780128
si:ch211-129c21.1ENSDARG0000002477528
sema4ba / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ba / Q62179* / SEMA4B* / semaphorin 4B*ENSDARG0000007441428
sema4e / semaphorin 4eENSDARG0000005299728
sema4c / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C / Q64151* / Q9C0C4* / semaphorin 4C*ENSDARG0000007961127
sema4bb / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Bb / Q62179* / SEMA4B* / semaphorin 4B*ENSDARG0000007610427
sema4gb / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Gb / SEMA4G* / Q9NTN9* / Q9WUH7* / semaphorin 4G*ENSDARG0000008814326


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013151  Immunoglobulin
 IPR013783  Immunoglobulin-like fold
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR027231  Semaphorin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0050919 negative chemotaxis IBA
 cellular_componentGO:0005615 extracellular space IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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