ENSDARG00000011672


Danio rerio

Features
Gene ID: ENSDARG00000011672
  
Biological name :sema3b
  
Synonyms : sema3b / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
  
Possible biological names infered from orthology : Q13214 / semaphorin 3B
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 26586484
Gene end: 26609259
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000015477
NCBI entrez gene - 567064     See in Manteia.
RefSeq - NM_001128346
RefSeq Peptide - NP_001121818
swissprot - M9MM94
ZFIN ID - ZDB-GENE-081105-78
Ensembl - ENSDARG00000011672
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEMA3BENSGALG00000013722Gallus gallus
 Q13214ENSG00000012171Homo sapiens
 Sema3bENSMUSG00000057969Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sema3ab / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab / SEMA3A* / O08665* / Q14563* / semaphorin 3A*ENSDARG0000004221055
sema3aa / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa / SEMA3A* / O08665* / Q14563* / semaphorin 3A*ENSDARG0000001923553
sema3bl / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl / Q9NS98* / Q4LFA9* / SEMA3G* / semaphorin 3G*ENSDARG0000000756048
sema3d / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D / O95025* / Q8BH34* / semaphorin 3D*ENSDARG0000001736948
sema3fa / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa / SEMA3F* / O88632* / Q13275* / semaphorin 3F*ENSDARG0000001116346
sema3fb / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb / SEMA3F* / O88632* / Q13275* / semaphorin 3F*ENSDARG0000005537345
si:dkey-49n23.1ENSDARG0000004092044
sema3e / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E / O15041* / P70275* / semaphorin 3E*ENSDARG0000003657144
sema3h / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3HENSDARG0000004261643
sema3gb / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3GbENSDARG0000001360743
sema3c / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C / Q62181* / Q99985* / semaphorin 3C*ENSDARG0000003430042
sema3ga / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3GaENSDARG0000004254542
sema4ga / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ga / SEMA4G* / Q9NTN9* / Q9WUH7* / semaphorin 4G*ENSDARG0000007659530
SEMA4D / semaphorin 4D / Q92854*ENSDARG0000006780130
sema4c / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C / Q64151* / Q9C0C4* / semaphorin 4C*ENSDARG0000007961129
sema4bb / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Bb / Q62179* / SEMA4B* / semaphorin 4B*ENSDARG0000007610429
sema4ba / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ba / Q62179* / SEMA4B* / semaphorin 4B*ENSDARG0000007441429
si:ch211-129c21.1ENSDARG0000002477528
sema4e / semaphorin 4eENSDARG0000005299727
sema4gb / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Gb / SEMA4G* / Q9NTN9* / Q9WUH7* / semaphorin 4G*ENSDARG0000008814326


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR007110  Immunoglobulin-like domain
 IPR013783  Immunoglobulin-like fold
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR027231  Semaphorin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0050919 negative chemotaxis IBA
 cellular_componentGO:0005615 extracellular space IBA
 molecular_functionGO:0038191 neuropilin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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