ENSMUSG00000057969


Mus musculus

Features
Gene ID: ENSMUSG00000057969
  
Biological name :Sema3b
  
Synonyms : Sema3b / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
  
Possible biological names infered from orthology : Q13214 / semaphorin 3B
  
Species: Mus musculus
  
Chr. number: 9
Strand: -1
Band: F1
Gene start: 107597674
Gene end: 107609229
  
Corresponding Affymetrix probe sets: 10596680 (MoGene1.0st)   1416644_a_at (Mouse Genome 430 2.0 Array)   1431795_a_at (Mouse Genome 430 2.0 Array)   1448415_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000141390
Ensembl peptide - ENSMUSP00000137952
Ensembl peptide - ENSMUSP00000141403
Ensembl peptide - ENSMUSP00000141928
Ensembl peptide - ENSMUSP00000141726
Ensembl peptide - ENSMUSP00000141614
Ensembl peptide - ENSMUSP00000073152
Ensembl peptide - ENSMUSP00000099588
Ensembl peptide - ENSMUSP00000099589
Ensembl peptide - ENSMUSP00000099590
Ensembl peptide - ENSMUSP00000099591
NCBI entrez gene - 20347     See in Manteia.
MGI - MGI:107561
RefSeq - XM_017313225
RefSeq - NM_009153
RefSeq - XM_006511664
RefSeq - XM_006511665
RefSeq - XM_006511666
RefSeq - XM_006511671
RefSeq - XM_006511673
RefSeq - XM_006511674
RefSeq - XM_011242862
RefSeq - XM_011242863
RefSeq - XM_011242864
RefSeq - XM_011242865
RefSeq - XM_011242867
RefSeq - NM_001042779
RefSeq - NM_001291537
RefSeq - NM_001291538
RefSeq - NM_001291539
RefSeq Peptide - NP_001036244
RefSeq Peptide - NP_001278466
RefSeq Peptide - NP_001278467
RefSeq Peptide - NP_001278468
RefSeq Peptide - NP_033179
swissprot - A0A0A6YWM9
swissprot - A0A0A6YW56
swissprot - A0A0G2JDD7
swissprot - A0A0A6YXC1
swissprot - A0A0A6YWW1
swissprot - M0QWQ7
swissprot - M9MMK0
Ensembl - ENSMUSG00000057969
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sema3bENSDARG00000011672Danio rerio
 SEMA3BENSGALG00000013722Gallus gallus
 Q13214ENSG00000012171Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O08665 / Sema3a / Semaphorin-3A / Q14563*ENSMUSG0000002888354
Q8BH34 / Sema3d / Semaphorin-3D / O95025*ENSMUSG0000004025447
Q4LFA9 / Sema3g / Semaphorin-3G / Q9NS98*ENSMUSG0000002190446
P70275 / Sema3e / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E / O15041* / semaphorin 3E*ENSMUSG0000006353146
O88632 / Sema3f / Semaphorin-3F / Q13275*ENSMUSG0000003468446
Q62181 / Sema3c / Semaphorin-3C / Q99985*ENSMUSG0000002878043
Q64151 / Sema4c / Semaphorin-4C / Q9C0C4*ENSMUSG0000002612132
O09126 / Sema4d / Semaphorin-4D / Q92854*ENSMUSG0000002145132
Q9WUH7 / Sema4g / Semaphorin-4G / Q9NTN9*ENSMUSG0000002520731
Q62179 / Sema4b / Semaphorin-4B ENSMUSG0000003053930
Q9Z123 / Sema4f / Semaphorin-4F / O95754* / ssemaphorin 4F*ENSMUSG0000000062729
Q62178 / Sema4a / Semaphorin-4A / Q9H3S1*ENSMUSG0000002806427


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013151  Immunoglobulin
 IPR013783  Immunoglobulin-like fold
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR027231  Semaphorin
 IPR036179  Immunoglobulin-like domain superfamily
 IPR036352  Sema domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Irs2tm1With/Irs2tm1With,Tg(Nes-cre)1Kln/0
Genetic Background: involves: 129S6/SvEvTac * C57BL/6J

Allelic Composition: Sema3btm1.1Brd/Sema3btm1.1Brd
Genetic Background: involves: 129S7/SvEvBrd * C57BL/6J

 MP:0008228 increased anterior commissure size "enlarged round bundle of nerve fibers that crosses the midline of the brain near the anterior limit of the third ventricle" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
Show

Allelic Composition: Tgif1tm1Dwot/Tgif1+
Genetic Background: involves: 129X1/SvJ * C57BL/6J

Allelic Composition: Sema3btm1Cast/Sema3b+
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/6A

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr