ENSDARG00000055373


Danio rerio

Features
Gene ID: ENSDARG00000055373
  
Biological name :sema3fb
  
Synonyms : sema3fb / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb
  
Possible biological names infered from orthology : O88632 / Q13275 / SEMA3F / semaphorin 3F
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 35447417
Gene end: 35575830
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000028248
Ensembl peptide - ENSDARP00000146383
Ensembl peptide - ENSDARP00000150784
NCBI entrez gene - 799945     See in Manteia.
swissprot - E7F6C0
ZFIN ID - ZDB-GENE-050513-2
Ensembl - ENSDARG00000055373
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEMA3FENSGALG00000029621Gallus gallus
 Q13275ENSG00000001617Homo sapiens
 O88632ENSMUSG00000034684Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sema3fa / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa / SEMA3F* / O88632* / Q13275* / semaphorin 3F*ENSDARG0000001116382
sema3ga / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3GaENSDARG0000004254557
sema3gb / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3GbENSDARG0000001360756
sema3c / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C / Q62181* / Q99985* / semaphorin 3C*ENSDARG0000003430049
sema3ab / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab / SEMA3A* / O08665* / Q14563* / semaphorin 3A*ENSDARG0000004221046
sema3aa / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa / SEMA3A* / O08665* / Q14563* / semaphorin 3A*ENSDARG0000001923545
sema3b / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B / Q13214* / semaphorin 3B*ENSDARG0000001167244
sema3bl / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl / Q9NS98* / Q4LFA9* / SEMA3G* / semaphorin 3G*ENSDARG0000000756043
sema3d / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D / O95025* / Q8BH34* / semaphorin 3D*ENSDARG0000001736942
si:dkey-49n23.1ENSDARG0000004092040
sema3e / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E / O15041* / P70275* / semaphorin 3E*ENSDARG0000003657138
sema3h / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3HENSDARG0000004261637
sema4ga / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ga / SEMA4G* / Q9NTN9* / Q9WUH7* / semaphorin 4G*ENSDARG0000007659529
sema4c / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C / Q64151* / Q9C0C4* / semaphorin 4C*ENSDARG0000007961127
sema4ba / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ba / Q62179* / SEMA4B* / semaphorin 4B*ENSDARG0000007441426
SEMA4D / semaphorin 4D / Q92854*ENSDARG0000006780126
si:ch211-129c21.1ENSDARG0000002477525
sema4gb / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Gb / SEMA4G* / Q9NTN9* / Q9WUH7* / semaphorin 4G*ENSDARG0000008814325
sema4bb / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Bb / Q62179* / SEMA4B* / semaphorin 4B*ENSDARG0000007610425
sema4e / semaphorin 4eENSDARG0000005299724


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013151  Immunoglobulin
 IPR013783  Immunoglobulin-like fold
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR027231  Semaphorin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0050919 negative chemotaxis IBA
 cellular_componentGO:0005615 extracellular space IBA
 molecular_functionGO:0038191 neuropilin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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