ENSG00000001617


Homo sapiens

Features
Gene ID: ENSG00000001617
  
Biological name :SEMA3F
  
Synonyms : Q13275 / SEMA3F / semaphorin 3F
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p21.31
Gene start: 50155045
Gene end: 50189075
  
Corresponding Affymetrix probe sets: 206832_s_at (Human Genome U133 Plus 2.0 Array)   209730_at (Human Genome U133 Plus 2.0 Array)   35666_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000392588
Ensembl peptide - ENSP00000388931
Ensembl peptide - ENSP00000398399
Ensembl peptide - ENSP00000416356
Ensembl peptide - ENSP00000409859
Ensembl peptide - ENSP00000400549
Ensembl peptide - ENSP00000002829
NCBI entrez gene - 6405     See in Manteia.
OMIM - 601124
RefSeq - XM_011534000
RefSeq - NM_001318798
RefSeq - NM_001318800
RefSeq - NM_004186
RefSeq - XM_005265381
RefSeq - XM_005265382
RefSeq - XM_006713289
RefSeq - XM_006713290
RefSeq - XM_011533998
RefSeq Peptide - NP_001305729
RefSeq Peptide - NP_004177
RefSeq Peptide - NP_001305727
swissprot - C9J1V2
swissprot - H7C4A2
swissprot - C9IYS6
swissprot - Q13275
swissprot - C9JPG5
swissprot - C9J4H5
Ensembl - ENSG00000001617
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sema3faENSDARG00000011163Danio rerio
 sema3fbENSDARG00000055373Danio rerio
 SEMA3FENSGALG00000029621Gallus gallus
 O88632ENSMUSG00000034684Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q99985 / SEMA3C / semaphorin 3CENSG0000007522351
Q14563 / SEMA3A / semaphorin 3AENSG0000007521346
Q13214 / SEMA3B / semaphorin 3BENSG0000001217145
O15041 / SEMA3E / semaphorin 3EENSG0000017038143
O95025 / SEMA3D / semaphorin 3DENSG0000015399343
Q9NS98 / SEMA3G / semaphorin 3GENSG0000001031942
SEMA4B / semaphorin 4BENSG0000018503328
Q92854 / SEMA4D / semaphorin 4DENSG0000018776428
Q9C0C4 / SEMA4C / semaphorin 4CENSG0000016875828
Q9NTN9 / SEMA4G / semaphorin 4GENSG0000009553928
Q9H3S1 / SEMA4A / semaphorin 4AENSG0000019618927
O95754 / SEMA4F / ssemaphorin 4FENSG0000013562225


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013783  Immunoglobulin-like fold
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR027231  Semaphorin
 IPR036179  Immunoglobulin-like domain superfamily
 IPR036352  Sema domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001755 neural crest cell migration IEA
 biological_processGO:0007411 axon guidance IDA
 biological_processGO:0021612 facial nerve structural organization IEA
 biological_processGO:0021637 trigeminal nerve structural organization IEA
 biological_processGO:0021675 nerve development ISS
 biological_processGO:0021785 branchiomotor neuron axon guidance IEA
 biological_processGO:0036486 ventral trunk neural crest cell migration IEA
 biological_processGO:0048843 negative regulation of axon extension involved in axon guidance IEA
 biological_processGO:0048846 axon extension involved in axon guidance ISS
 biological_processGO:0050919 negative chemotaxis IEA
 biological_processGO:0061549 sympathetic ganglion development ISS
 biological_processGO:0097490 sympathetic neuron projection extension ISS
 biological_processGO:0097491 sympathetic neuron projection guidance ISS
 biological_processGO:1901166 neural crest cell migration involved in autonomic nervous system development IEA
 biological_processGO:1902285 semaphorin-plexin signaling pathway involved in neuron projection guidance ISS
 biological_processGO:1902287 semaphorin-plexin signaling pathway involved in axon guidance IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space TAS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0038191 neuropilin binding IBA
 molecular_functionGO:0045499 chemorepellent activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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