ENSG00000075213


Homo sapiens

Features
Gene ID: ENSG00000075213
  
Biological name :SEMA3A
  
Synonyms : Q14563 / SEMA3A / semaphorin 3A
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q21.11
Gene start: 83955777
Gene end: 84492724
  
Corresponding Affymetrix probe sets: 206805_at (Human Genome U133 Plus 2.0 Array)   244163_at (Human Genome U133 Plus 2.0 Array)   244849_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000265362
Ensembl peptide - ENSP00000415260
Ensembl peptide - ENSP00000404800
Ensembl peptide - ENSP00000402093
Ensembl peptide - ENSP00000391900
NCBI entrez gene - 10371     See in Manteia.
OMIM - 603961
RefSeq - XM_006715839
RefSeq - XM_011515734
RefSeq - XM_017011673
RefSeq - NM_006080
RefSeq - XM_005250110
RefSeq - XM_005250111
RefSeq Peptide - NP_006071
swissprot - Q14563
swissprot - C9J9C4
swissprot - A0A0C4DG50
swissprot - C9JD25
Ensembl - ENSG00000075213
  
Related genetic diseases (OMIM): 614897 - {Hypogonadotropic hypogonadism 16 with or without anosmia}, 614897
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sema3aaENSDARG00000019235Danio rerio
 sema3abENSDARG00000042210Danio rerio
 SEMA3AENSGALG00000006560Gallus gallus
 O08665ENSMUSG00000028883Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O95025 / SEMA3D / semaphorin 3DENSG0000015399354
Q13214 / SEMA3B / semaphorin 3BENSG0000001217152
O15041 / SEMA3E / semaphorin 3EENSG0000017038147
Q13275 / SEMA3F / semaphorin 3FENSG0000000161747
Q9NS98 / SEMA3G / semaphorin 3GENSG0000001031946
Q99985 / SEMA3C / semaphorin 3CENSG0000007522344
Q9NTN9 / SEMA4G / semaphorin 4GENSG0000009553930
Q9C0C4 / SEMA4C / semaphorin 4CENSG0000016875830
Q92854 / SEMA4D / semaphorin 4DENSG0000018776430
SEMA4B / semaphorin 4BENSG0000018503328
Q9H3S1 / SEMA4A / semaphorin 4AENSG0000019618927
O95754 / SEMA4F / ssemaphorin 4FENSG0000013562227


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013783  Immunoglobulin-like fold
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR027231  Semaphorin
 IPR036179  Immunoglobulin-like domain superfamily
 IPR036352  Sema domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001764 neuron migration ISS
 biological_processGO:0002027 regulation of heart rate IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007411 axon guidance TAS
 biological_processGO:0007413 axonal fasciculation IEA
 biological_processGO:0008045 motor neuron axon guidance IEA
 biological_processGO:0010633 negative regulation of epithelial cell migration IEA
 biological_processGO:0010977 negative regulation of neuron projection development IMP
 biological_processGO:0021612 facial nerve structural organization IEA
 biological_processGO:0021637 trigeminal nerve structural organization IEA
 biological_processGO:0021675 nerve development ISS
 biological_processGO:0021772 olfactory bulb development IMP
 biological_processGO:0021785 branchiomotor neuron axon guidance IEA
 biological_processGO:0021828 gonadotrophin-releasing hormone neuronal migration to the hypothalamus IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030517 negative regulation of axon extension IEA
 biological_processGO:0036486 ventral trunk neural crest cell migration IEA
 biological_processGO:0046330 positive regulation of JNK cascade TAS
 biological_processGO:0048485 sympathetic nervous system development TAS
 biological_processGO:0048813 dendrite morphogenesis IEA
 biological_processGO:0048841 regulation of axon extension involved in axon guidance IDA
 biological_processGO:0048843 negative regulation of axon extension involved in axon guidance IEA
 biological_processGO:0048846 axon extension involved in axon guidance ISS
 biological_processGO:0048880 sensory system development TAS
 biological_processGO:0050919 negative chemotaxis IEA
 biological_processGO:0060385 axonogenesis involved in innervation ISS
 biological_processGO:0060666 dichotomous subdivision of terminal units involved in salivary gland branching IEA
 biological_processGO:0061549 sympathetic ganglion development ISS
 biological_processGO:0061551 trigeminal ganglion development IEA
 biological_processGO:0071526 semaphorin-plexin signaling pathway TAS
 biological_processGO:0097490 sympathetic neuron projection extension ISS
 biological_processGO:0097491 sympathetic neuron projection guidance ISS
 biological_processGO:0150020 basal dendrite arborization TAS
 biological_processGO:1901166 neural crest cell migration involved in autonomic nervous system development ISS
 biological_processGO:1902285 semaphorin-plexin signaling pathway involved in neuron projection guidance ISS
 biological_processGO:1902287 semaphorin-plexin signaling pathway involved in axon guidance IEA
 biological_processGO:1903045 neural crest cell migration involved in sympathetic nervous system development IEA
 biological_processGO:1903375 facioacoustic ganglion development IEA
 biological_processGO:2000020 positive regulation of male gonad development IEA
 biological_processGO:2001224 positive regulation of neuron migration IBA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0030424 axon IBA
 cellular_componentGO:0030425 dendrite IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030215 semaphorin receptor binding IEA
 molecular_functionGO:0038191 neuropilin binding ISS
 molecular_functionGO:0045499 chemorepellent activity TAS


Pathways (from Reactome)
Pathway description
Sema3A PAK dependent Axon repulsion
SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion
CRMPs in Sema3A signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000104 Renal agenesis 
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 HP:0000144 Decreased fertility 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000458 Anosmia "An inability to perceive odors. This is a general term describing inability to smell arising in any part of the process of smelling from absorption of odorants into the nasal mucous overlying the olfactory epithelium, diffusion to the cilia, binding to olfactory receptor sites, generation of action potentials in olfactory neurons, and perception of a smell." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000551 Abnormal color vision 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000771 Gynecomastia 
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 HP:0000786 Primary amenorrhea 
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 HP:0000823 Delayed puberty 
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 HP:0000830 Hypopituitarism "A condition of reduced function of the pituitary gland characterized by decreased secretion of one or more of the eight pituitary hormones." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001335 Mirror hand movements (bimanual synkinesia) 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001608 Abnormality of the voice "Any abnormality of the voice." [HPO:curators]
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 HP:0001761 Pes cavus 
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0003164 Hypothalamic gonadotropin-releasing hormone (GNRH) deficiency 
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 HP:0003187 Breast hypoplasia 
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 HP:0004349 Reduced bone mineral density "A reduction of bone mineral density, that is, of the amount of matter per cubic centimeter of bones." [HPO:curators]
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 HP:0004409 Hyposmia "A decreased sensitivity to odorants (that is, a decreased ability to perceive odors)." [HPO:curators]
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0008734 Decreased testicular size 
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 HP:0009804 Reduced number of teeth 
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 HP:0010550 Paraplegia "Severe or complete weakness of both lower extremities with sparing of the upper extremities." [HPO:curators]
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 HP:0030016 Dyspareunia "Recurrent or persistent genital pain associated with sexual intercourse." []
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100639 Erectile abnormalities 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000010810 FYN / P06241 / FYN proto-oncogene, Src family tyrosine kinase  / reaction / complex
 ENSG00000082701 GSK3B / P49841 / glycogen synthase kinase 3 beta  / reaction
 ENSG00000077264 PAK3 / O75914 / p21 (RAC1) activated kinase 3  / reaction / complex
 ENSG00000164885 CDK5 / Q00535 / cyclin dependent kinase 5  / complex / reaction
 ENSG00000076356 O75051 / PLXNA2 / plexin A2  / reaction / complex
 ENSG00000099250 NRP1 / O14786 / neuropilin 1  / reaction / complex
 ENSG00000221866 PLXNA4 / Q9HCM2 / plexin A4  / reaction / complex
 ENSG00000114554 PLXNA1 / Q9UIW2 / plexin A1  / reaction / complex
 ENSG00000075213 Q14563 / SEMA3A / semaphorin 3A  / complex
 ENSG00000149269 PAK1 / Q13153 / p21 (RAC1) activated kinase 1  / complex / reaction
 ENSG00000182511 FES / P07332 / FES proto-oncogene, tyrosine kinase  / reaction / complex
 ENSG00000176749 CDK5R1 / Q15078 / cyclin dependent kinase 5 regulatory subunit 1  / complex / reaction
 ENSG00000136238 RAC1 / P63000 / Rac family small GTPase 1  / complex / reaction
 ENSG00000006607 FARP2 / O94887 / FERM, ARH/RhoGEF and pleckstrin domain protein 2  / reaction
 ENSG00000130827 P51805 / PLXNA3 / plexin A3  / complex / reaction
 ENSG00000180370 PAK2 / Q13177 / p21 (RAC1) activated kinase 2  / complex / reaction
 ENSG00000172602 RND1 / Q92730 / Rho family GTPase 1  / complex / reaction






 

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