ENSG00000196189


Homo sapiens

Features
Gene ID: ENSG00000196189
  
Biological name :SEMA4A
  
Synonyms : Q9H3S1 / SEMA4A / semaphorin 4A
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: q22
Gene start: 156147366
Gene end: 156177752
  
Corresponding Affymetrix probe sets: 219259_at (Human Genome U133 Plus 2.0 Array)   234072_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000401391
Ensembl peptide - ENSP00000399230
Ensembl peptide - ENSP00000487730
Ensembl peptide - ENSP00000347117
Ensembl peptide - ENSP00000357265
Ensembl peptide - ENSP00000357267
Ensembl peptide - ENSP00000357268
Ensembl peptide - ENSP00000357269
Ensembl peptide - ENSP00000392865
NCBI entrez gene - 64218     See in Manteia.
OMIM - 607292
RefSeq - XM_017002057
RefSeq - NM_001193300
RefSeq - NM_001193301
RefSeq - NM_001193302
RefSeq - NM_022367
RefSeq - XM_011509871
RefSeq - XM_011509872
RefSeq - XM_011509873
RefSeq - XM_011509874
RefSeq - XM_011509875
RefSeq - XM_011509876
RefSeq - XM_011509878
RefSeq - XM_011509879
RefSeq - XM_017002056
RefSeq Peptide - NP_001180230
RefSeq Peptide - NP_001180231
RefSeq Peptide - NP_071762
RefSeq Peptide - NP_001180229
swissprot - Q5TCJ7
swissprot - A0A0J9YVY6
swissprot - Q9H3S1
swissprot - Q5TCI4
swissprot - Q5TCI6
swissprot - Q5TCJ5
Ensembl - ENSG00000196189
  
Related genetic diseases (OMIM): 610282 - Retinitis pigmentosa 35, 610282
  610283 - Cone-rod dystrophy 10, 610283
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sema4aaENSDARG00000077103Danio rerio
 sema4abENSDARG00000062352Danio rerio
 Q62178ENSMUSG00000028064Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SEMA4B / semaphorin 4BENSG0000018503337
Q9C0C4 / SEMA4C / semaphorin 4CENSG0000016875834
Q92854 / SEMA4D / semaphorin 4DENSG0000018776434
Q9NTN9 / SEMA4G / semaphorin 4GENSG0000009553931
O95754 / SEMA4F / ssemaphorin 4FENSG0000013562230
O95025 / SEMA3D / semaphorin 3DENSG0000015399328
Q13214 / SEMA3B / semaphorin 3BENSG0000001217128
Q14563 / SEMA3A / semaphorin 3AENSG0000007521328
Q13275 / SEMA3F / semaphorin 3FENSG0000000161728
Q99985 / SEMA3C / semaphorin 3CENSG0000007522326
Q9NS98 / SEMA3G / semaphorin 3GENSG0000001031926
O15041 / SEMA3E / semaphorin 3EENSG0000017038125


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR002165  Plexin repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR027231  Semaphorin
 IPR036352  Sema domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0002250 adaptive immune response IEA
 biological_processGO:0002292 T cell differentiation involved in immune response IEA
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007409 axonogenesis IEA
 biological_processGO:0008360 regulation of cell shape IEA
 biological_processGO:0010594 regulation of endothelial cell migration IEA
 biological_processGO:0016525 negative regulation of angiogenesis IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0045063 T-helper 1 cell differentiation IEA
 biological_processGO:0050919 negative chemotaxis IBA
 biological_processGO:0071526 semaphorin-plexin signaling pathway IEA
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Other semaphorin interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000529 Progressive visual loss 
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 HP:0000548 Cone-rod dystrophy 
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 HP:0000551 Abnormal color vision 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000608 Macular degeneration 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001000 Abnormality of skin pigmentation 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007994 Peripheral visual field loss 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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 HP:0009926 Increased tear production "Abnormally in creased lacrimation." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000004399 PLXND1 / Q9Y4D7 / plexin D1  / reaction / complex






 

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