ENSG00000004399


Homo sapiens

Features
Gene ID: ENSG00000004399
  
Biological name :PLXND1
  
Synonyms : plexin D1 / PLXND1 / Q9Y4D7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q22.1
Gene start: 129555175
Gene end: 129606818
  
Corresponding Affymetrix probe sets: 1563657_at (Human Genome U133 Plus 2.0 Array)   212235_at (Human Genome U133 Plus 2.0 Array)   38671_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000426540
Ensembl peptide - ENSP00000426241
Ensembl peptide - ENSP00000427696
Ensembl peptide - ENSP00000317128
Ensembl peptide - ENSP00000423832
Ensembl peptide - ENSP00000426162
NCBI entrez gene - 23129     See in Manteia.
OMIM - 604282
RefSeq - XM_011512592
RefSeq - NM_015103
RefSeq - XM_011512588
RefSeq - XM_011512589
RefSeq - XM_011512590
RefSeq Peptide - NP_055918
swissprot - Q9Y4D7
swissprot - D6RH25
swissprot - H0YA64
swissprot - H0YAB2
swissprot - H0YAM9
swissprot - H0Y9D1
Ensembl - ENSG00000004399
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 plxnd1ENSDARG00000086057Danio rerio
 PLXND1ENSGALG00000008473Gallus gallus
 Plxnd1ENSMUSG00000030123Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O43157 / PLXNB1 / plexin B1ENSG0000016405034
PLXNB3 / Q9ULL4 / plexin B3ENSG0000019875334
O15031 / PLXNB2 / plexin B2ENSG0000019657632
PLXNA1 / Q9UIW2 / plexin A1ENSG0000011455431
PLXNA4 / Q9HCM2 / plexin A4ENSG0000022186630
O75051 / PLXNA2 / plexin A2ENSG0000007635630
P51805 / PLXNA3 / plexin A3ENSG0000013082729
O60486 / PLXNC1 / plexin C1ENSG0000013604027


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR002165  Plexin repeat
 IPR002909  IPT domain
 IPR008936  Rho GTPase activation protein
 IPR013548  Plexin, cytoplasmic RasGAP domain
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR021157  Cytochrome c1, transmembrane anchor, C-terminal
 IPR031148  Plexin family
 IPR036352  Sema domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis ISS
 biological_processGO:0001569 branching involved in blood vessel morphogenesis IEA
 biological_processGO:0003151 outflow tract morphogenesis IEA
 biological_processGO:0003279 cardiac septum development IEA
 biological_processGO:0007162 negative regulation of cell adhesion IBA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007221 positive regulation of transcription of Notch receptor target TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007416 synapse assembly IEA
 biological_processGO:0008360 regulation of cell shape IBA
 biological_processGO:0030334 regulation of cell migration IEA
 biological_processGO:0032092 positive regulation of protein binding IEA
 biological_processGO:0035904 aorta development IEA
 biological_processGO:0043087 regulation of GTPase activity IBA
 biological_processGO:0043542 endothelial cell migration IEA
 biological_processGO:0045765 regulation of angiogenesis IEA
 biological_processGO:0050772 positive regulation of axonogenesis IBA
 biological_processGO:0060666 dichotomous subdivision of terminal units involved in salivary gland branching IEA
 biological_processGO:0060976 coronary vasculature development IEA
 biological_processGO:0071526 semaphorin-plexin signaling pathway IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030027 lamellipodium IDA
 cellular_componentGO:0031258 lamellipodium membrane IEA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0017154 semaphorin receptor activity IEA
 molecular_functionGO:0019904 protein domain specific binding IPI


Pathways (from Reactome)
Pathway description
Other semaphorin interactions
NOTCH3 Intracellular Domain Regulates Transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000194 Open mouth 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000232 Everted lower lip 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000298 Mask-like facies 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000498 Blepharitis "Inflammation of the eyelids." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000691 Microdontia 
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 HP:0000717 Autism 
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 HP:0001156 Brachydactyly 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001522 Death in infancy 
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 HP:0001608 Abnormality of the voice "Any abnormality of the voice." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002804 Arthrogryposis multiplex congenita 
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 HP:0002997 Abnormality of the ulna "Ab abnormality of the ulna bone of the forearm." [HPO:curators]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0004050 Absent hands 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004408 Abnormality of the sense of smell 
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 HP:0005914 Aplasia/Hypoplasia involving the metacarpal bones "Aplasia or Hypoplasia affecting the metacarpal bones." [HPO:curators]
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006501 Aplasia/Hypoplasia of the radius "A small/hypoplastic or absent/aplastic radius." [HPO:curators]
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 HP:0007565 Multiple cafe-au-lait spots 
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0008872 Feeding problems in infancy 
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 HP:0009601 Aplasia/Hypoplasia of the thumb "Hypoplastic/small or absent thumb." [HPO:curators]
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 HP:0009751 Aplasia of the pectoralis major muscle "Absence of the pectoralis major muscle." [HPO:curators]
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 HP:0009804 Reduced number of teeth 
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 HP:0010295 Aplasia/Hypoplasia of the tongue "Absence or underdevelopment of the tongue." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0100783 Breast aplasia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000196189 Q9H3S1 / SEMA4A / semaphorin 4A  / reaction / complex
 ENSG00000170381 O15041 / SEMA3E / semaphorin 3E  / complex / reaction






 

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