ENSDARG00000044373


Danio rerio

Features
Gene ID: ENSDARG00000044373
  
Biological name :atg4c
  
Synonyms : atg4c / autophagy related 4C, cysteine peptidase
  
Possible biological names infered from orthology : Cysteine protease ATG4C / Q811C2 / Q96DT6
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 32300018
Gene end: 32315494
  
Corresponding Affymetrix probe sets: Dr.4547.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000051778
Ensembl peptide - ENSDARP00000107294
NCBI entrez gene - 415193     See in Manteia.
swissprot - Q6IQ96
ZFIN ID - ZDB-GENE-040625-84
Ensembl - ENSDARG00000044373
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ATG4CENSGALG00000010985Gallus gallus
 ATG4CENSG00000125703Homo sapiens
 Atg4cENSMUSG00000028550Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
atg4da / autophagy related 4D, cysteine peptidase a / ATG4D* / Q8BGV9* / Q86TL0* / autophagy related 4D cysteine peptidase* / Cysteine protease ATG4D Cysteine protease ATG4D, mitochondrial*ENSDARG0000004354845
atg4db / autophagy related 4D, cysteine peptidase b / ATG4D* / Q8BGV9* / Q86TL0* / autophagy related 4D cysteine peptidase* / Cysteine protease ATG4D Cysteine protease ATG4D, mitochondrial*ENSDARG0000008814537
atg4a / autophagy related 4A, cysteine peptidase / Q8WYN0*ENSDARG0000001453126
atg4b / Q6DG88 / autophagy related 4B, cysteine peptidase / Q9Y4P1*ENSDARG0000005210426


Protein motifs (from Interpro)
Interpro ID Name
 IPR005078  Peptidase C54
 IPR032915  Cysteine protease ATG4C


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006501 C-terminal protein lipidation IBA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006612 protein targeting to membrane IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0044804 autophagy of nucleus IBA
 biological_processGO:0051697 protein delipidation IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0004197 cysteine-type endopeptidase activity IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Macroautophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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