ENSDARG00000045776


Danio rerio

Features
Gene ID: ENSDARG00000045776
  
Biological name :cnbpa
  
Synonyms : CCHC-type zinc finger, nucleic acid binding protein a / cnbpa
  
Possible biological names infered from orthology : CCHC-type zinc finger nucleic acid binding protein / CNBP / Mus musculus cellular nucleic acid binding protein (Cnbp), transcript variant 4, mRNA. / P53996 / P62633 / Q8WW36 / ZCCHC13 / zinc finger, CCHC domain containing 13 / zinc finger CCHC-type containing 13
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 4699144
Gene end: 4705253
  
Corresponding Affymetrix probe sets: Dr.24219.1.S1_at (Zebrafish Array)   Dr.24219.1.S2_at (Zebrafish Array)   NM_199749_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000115441
Ensembl peptide - ENSDARP00000116457
Ensembl peptide - ENSDARP00000067292
Ensembl peptide - ENSDARP00000106278
NCBI entrez gene - 326846     See in Manteia.
RefSeq - NM_199749
RefSeq Peptide - NP_001231665
RefSeq Peptide - NP_956043
swissprot - E9QBN6
swissprot - F1Q6Z5
ZFIN ID - ZDB-GENE-030131-5045
Ensembl - ENSDARG00000045776
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNBPENSGALG00000005001Gallus gallus
 CNBPENSG00000169714Homo sapiens
 Q8WW36ENSG00000187969Homo sapiens
 CnbpENSMUSG00000030057Mus musculus
 Zcchc13ENSMUSG00000031330Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cnbpb / CCHC-type zinc finger, nucleic acid binding protein b / CNBP* / P62633* / Q8WW36* / P53996* / ZCCHC13* / zinc finger CCHC-type containing 13* / zinc finger, CCHC domain containing 1...ENSDARG0000007092285


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0014029 neural crest formation IMP
 biological_processGO:0014036 neural crest cell fate specification IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0048703 embryonic viscerocranium morphogenesis IMP
 biological_processGO:0050727 regulation of inflammatory response IMP
 biological_processGO:0051216 cartilage development IMP
 biological_processGO:0060322 head development IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0003697 single-stranded DNA binding IDA
 molecular_functionGO:0003723 RNA binding IDA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
brain apoptotic , abnormal
brain malformed , abnormal
Show

 ZFA:0000029 hindbrain hindbrain malformed , abnormal
Show

 ZFA:0000037 anatomical structure anatomical structure decreased amount , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary decreased size , abnormal
midbrain hindbrain boundary hypoplastic , abnormal
midbrain hindbrain boundary aplastic , abnormal
midbrain hindbrain boundary malformed , abnormal
Show

 ZFA:0000050 optic vesicle optic vesicle decreased amount , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
eye decreased amount , abnormal
Show

 ZFA:0000109 forebrain forebrain malformed , abnormal
Show

 ZFA:0000128 midbrain midbrain malformed , abnormal
Show

 ZFA:0000152 retina retina malformed , abnormal
Show

 ZFA:0001094 whole organism whole organism increased amount , abnormal
whole organism decreased amount , abnormal
whole organism decreased life span , abnormal
whole organism decreased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
Show

 ZFA:0001205 Meckel s cartilage Meckels cartilage deformed , abnormal
Meckels cartilage aplastic , abnormal
Show

 ZFA:0001216 splanchnocranium splanchnocranium morphology , abnormal
Show

 ZFA:0001399 palatoquadrate cartilage palatoquadrate cartilage decreased size , abnormal
Show

 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage malformed , abnormal
ceratohyal cartilage position , abnormal
ceratohyal cartilage decreased size , abnormal
Show

 ZFA:0001405 ethmoid cartilage ethmoid cartilage morphology , abnormal
ethmoid cartilage aplastic , abnormal
Show

 ZFA:0001422 hyosymplectic cartilage hyosymplectic cartilage decreased size , abnormal
Show

 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage aplastic , abnormal
Show

 ZFA:0001516 ceratobranchial cartilage ceratobranchial cartilage decreased amount , abnormal
Show

 ZFA:0001580 neurocranium neurocranium cartilage element decreased size , abnormal
Show

 ZFA:0001611 pharyngeal arch 2 pharyngeal arch 2 decreased size , abnormal
Show

 ZFA:0001612 pharyngeal arch 1 pharyngeal arch 1 decreased size , abnormal
Show

 ZFA:0001613 pharyngeal arch 3-7 pharyngeal arch 3-7 disorganized , abnormal
Show

 ZFA:0005059 trabecular layer trabecular layer chondrocyte decreased amount , abnormal
trabecular layer aplastic , abnormal
Show

 ZFA:0009084 chondrocyte chondrocyte morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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