ENSG00000169714


Homo sapiens

Features
Gene ID: ENSG00000169714
  
Biological name :CNBP
  
Synonyms : CCHC-type zinc finger nucleic acid binding protein / CNBP / P62633
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q21.3
Gene start: 129169484
Gene end: 129183922
  
Corresponding Affymetrix probe sets: 206158_s_at (Human Genome U133 Plus 2.0 Array)   227731_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000421323
Ensembl peptide - ENSP00000410769
Ensembl peptide - ENSP00000422110
Ensembl peptide - ENSP00000426223
Ensembl peptide - ENSP00000424787
Ensembl peptide - ENSP00000399488
Ensembl peptide - ENSP00000400444
Ensembl peptide - ENSP00000410619
NCBI entrez gene - 7555     See in Manteia.
OMIM - 116955
RefSeq - NM_001127192
RefSeq - NM_001127193
RefSeq - NM_001127194
RefSeq - NM_001127195
RefSeq - NM_001127196
RefSeq - NM_003418
RefSeq Peptide - NP_001120668
RefSeq Peptide - NP_003409
RefSeq Peptide - NP_001120664
RefSeq Peptide - NP_001120665
RefSeq Peptide - NP_001120666
RefSeq Peptide - NP_001120667
swissprot - P62633
swissprot - A0A0S2Z4Q3
swissprot - A0A0S2Z4K2
swissprot - D6RAT4
Ensembl - ENSG00000169714
  
Related genetic diseases (OMIM): 602668 - Myotonic dystrophy 2, 602668
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cnbpaENSDARG00000045776Danio rerio
 cnbpbENSDARG00000070922Danio rerio
 CNBPENSGALG00000005001Gallus gallus
 CnbpENSMUSG00000030057Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8WW36 / ZCCHC13 / zinc finger CCHC-type containing 13ENSG0000018796956


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type
 IPR036875  Zinc finger, CCHC-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated TAS
 biological_processGO:0006695 cholesterol biosynthetic process TAS
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum ISS
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0003727 single-stranded RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000798 Oligospermia 
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 HP:0000819 Diabetes mellitus 
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 HP:0001649 Tachycardia "A rapid heartrate that exceeds the range of the normal resting heartrate for age." [HPO:curators]
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 HP:0001962 Palpitations 
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 HP:0002292 Frontal balding (male pattern baldness) 
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 HP:0002486 Myotonia "Myotonia is characterized by an abnormally slow relaxation of the muscles after voluntary contraction or electrical stimulation. During physical examination, myotonia may be elicited by asking the patient to make a tight fist and then quickly open the hand." [HPO:curators]
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 HP:0002850 Decreased IgM 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
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 HP:0003554 Type 2 muscle fiber atrophy "Atrophy (wasting) affecting primary type 2 muscle fibers. This feature in general can only be observed on muscle biopsy." [HPO:curators]
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0003722 Neck flexor weakness "Weakness of the muscles involved in neck flexion (sternocleidomastoid, longus capitus, longus colli, and scalenus anterior)." [HPO:curators]
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 HP:0004315 Decreased IgG level "An abnormally decreased level of immunoglobulin G in blood." [HPO:probinson]
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 HP:0007889 Cataracts, posterior, subcapsular, iridescent 
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 HP:0008189 Insulin insensitivity 
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 HP:0008232 Elevated follicle stimulating hormone 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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