ENSDARG00000046010


Danio rerio

Features
Gene ID: ENSDARG00000046010
  
Biological name :kdm2bb
  
Synonyms : kdm2bb / lysine (K)-specific demethylase 2Bb
  
Possible biological names infered from orthology : KDM2B / lysine demethylase 2B / Lysine-specific demethylase 2B / Q6P1G2 / Q8NHM5
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 41826331
Gene end: 41907213
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000093306
Ensembl peptide - ENSDARP00000133053
NCBI entrez gene - 100536129     See in Manteia.
RefSeq - XM_021479463
RefSeq - XM_021479464
swissprot - F6P9Q3
swissprot - A0A0R4IHI9
ZFIN ID - ZDB-GENE-080225-13
Ensembl - ENSDARG00000046010
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KDM2BENSGALG00000004225Gallus gallus
 KDM2BENSG00000089094Homo sapiens
 Kdm2bENSMUSG00000029475Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
kdm2aa / lysine (K)-specific demethylase 2Aa / KDM2A* / Q9Y2K7* / lysine demethylase 2A*ENSDARG0000005965343
kdm2ab / lysine (K)-specific demethylase 2Ab / KDM2A* / Q9Y2K7* / lysine demethylase 2A*ENSDARG0000007813342
kdm2ba / lysine (K)-specific demethylase 2BaENSDARG0000003659337
btr30 / FBXL19 / zgc:158376 / Q6PCT2* / F-box and leucine rich repeat protein 19*ENSDARG0000010336218
phf2 / PHD finger protein 2 / O75151* / Q9WTU0* / Lysine-specific demethylase PHF2 *ENSDARG0000001869117
phf8 / P0CH95 / PHD finger protein 8 / Q80TJ7* / Q9UPP1* / 4921501E09Rik* / RIKEN cDNA 4921501E09 gene* / Histone lysine demethylase PHF8 *ENSDARG0000000658417
kdm7ab / lysine (K)-specific demethylase 7Ab / KDM7A* / Q3UWM4* / Q6ZMT4* / lysine demethylase 7A* / Lysine-specific demethylase 7A *ENSDARG0000001855915
kdm7aa / Q5RHD1 / lysine (K)-specific demethylase 7Aa / PHF8* / Q80TJ7* / Q9UPP1* / 4921501E09Rik* / PHD finger protein 8* / RIKEN cDNA 4921501E09 gene* / Histone lysine demethylase PHF8 *ENSDARG000000181113


Protein motifs (from Interpro)
Interpro ID Name
 IPR001810  F-box domain
 IPR002857  Zinc finger, CXXC-type
 IPR003347  JmjC domain
 IPR006553  Leucine-rich repeat, cysteine-containing subtype
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019787  Zinc finger, PHD-finger
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002244 hematopoietic progenitor cell differentiation IMP
 biological_processGO:0009303 rRNA transcription IMP
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage malformed , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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