Manteia

ENSDARG00000052037

Danio rerio

Features

Gene ID:	ENSDARG00000052037

Biological name :	trim35-1

Synonyms :	trim35-1 / tripartite motif containing 35-1

Possible biological names infered from orthology :	Q9UPQ4 / TRIM35 / tripartite motif containing 35

Species:	Danio rerio

Chr. number:	1
Strand:	1
Band:
Gene start:	58039551
Gene end:	58049515

Corresponding Affymetrix probe sets:

Cross references:	Ensembl peptide - ENSDARP00000068267 NCBI entrez gene - 553197 See in Manteia. RefSeq - NM_001018146 RefSeq Peptide - NP_001018156 swissprot - Q503E5 ZFIN ID - ZDB-GENE-050522-17 Ensembl - ENSDARG00000052037

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
TRIM35	ENSGALG00000016595	Gallus gallus
Q9UPQ4	ENSG00000104228	Homo sapiens
Trim35	ENSMUSG00000022043	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
trim35-10 / tripartite motif containing 35-10 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000033071	33
si:ch211-12p12.2 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102219	32
trim35-33 / tripartite motif containing 35-33 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000060838	32
trim35-23 / tripartite motif containing 35-23 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102368	32
si:dkey-37m8.11 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000040230	31
si:ch211-175l6.2 / TRIM35 (1 of many) / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000100721	31
CU571315.1 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000031534	31
trim35-19 / tripartite motif containing 35-19 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000099639	31
trim35-20 / tripartite motif containing 35-20 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000070847	31
trim35-22 / tripartite motif containing 35-22 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102264	31
trim35-24 / tripartite motif containing 35-24 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000099684	31
trim35-7 / tripartite motif containing 35-7 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000058958	31
CR394535.1 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000103193	31
trim35-28 / tripartite motif containing 35-28 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000021021	31
trim35-12 / tripartite motif containing 35-12 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000101264	31
trim35-25 / tripartite motif containing 35-25 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000101055	30
zmp:0000001316 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000092407	30
trim35-34 / tripartite motif containing 35-34 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000022271	30
trim35-27 / tripartite motif containing 35-27 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000035009	30
si:ch1073-324l1.1 / TRIM35 (1 of many) / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000095913	30

Protein motifs (from Interpro)

Interpro ID	Name
IPR000315	B-box-type zinc finger
IPR001841	Zinc finger, RING-type
IPR001870	B30.2/SPRY domain
IPR003613	U box domain
IPR003879	Butyrophylin-like, SPRY domain
IPR006574	SPRY-associated
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR013320	Concanavalin A-like lectin/glucanase domain superfamily
IPR017907	Zinc finger, RING-type, conserved site
IPR027370	RING-type zinc-finger, LisH dimerisation motif

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0016567	protein ubiquitination	IEA
cellular_component	GO:0005622	intracellular	IEA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0016021	integral component of membrane	IEA
molecular_function	GO:0004842	ubiquitin-protein transferase activity	IEA
molecular_function	GO:0008270	zinc ion binding	IEA
molecular_function	GO:0046872	metal ion binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr