ENSDARG00000052728


Danio rerio

Features
Gene ID: ENSDARG00000052728
  
Biological name :sltm
  
Synonyms : SAFB-like, transcription modulator / sltm
  
Possible biological names infered from orthology : Q8CH25 / Q9NWH9
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 30532636
Gene end: 30560450
  
Corresponding Affymetrix probe sets: Dr.15357.1.S1_at (Zebrafish Array)   Dr.15690.1.S1_at (Zebrafish Array)   Dr.15690.2.S1_a_at (Zebrafish Array)   Dr.15690.2.S1_x_at (Zebrafish Array)   Dr.3470.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000142795
Ensembl peptide - ENSDARP00000154458
Ensembl peptide - ENSDARP00000142810
Ensembl peptide - ENSDARP00000115812
Ensembl peptide - ENSDARP00000120316
NCBI entrez gene - 406642     See in Manteia.
swissprot - A0A1D5NSJ4
swissprot - A0A1D5NSI0
swissprot - F1Q6F9
swissprot - F1QCC1
ZFIN ID - ZDB-GENE-040426-2647
Ensembl - ENSDARG00000052728
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLTMENSGALG00000004192Gallus gallus
 SLTMENSG00000137776Homo sapiens
 SltmENSMUSG00000032212Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
safb / scaffold attachment factor B / SAFB2* / D3YXK2* / Q14151* / Q15424* / Q80YR5* / scaffold attachment factor B2* / Scaffold attachment factor B1 *ENSDARG0000002046725


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003034  SAP domain
 IPR034780  SAFB-like transcription modulator


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr