ENSGALG00000004192


Gallus gallus

Features
Gene ID: ENSGALG00000004192
  
Biological name :SLTM
  
Synonyms : SAFB like transcription modulator / SLTM
  
Possible biological names infered from orthology : Q8CH25 / Q9NWH9
  
Species: Gallus gallus
  
Chr. number: 10
Strand: 1
Band:
Gene start: 6810737
Gene end: 6833633
  
Corresponding Affymetrix probe sets: GgaAffx.2589.1.S1_s_at (Chicken Array)   GgaAffx.26131.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000006652
NCBI entrez gene - 415401     See in Manteia.
RefSeq - XM_015278904
RefSeq - XM_015278905
RefSeq - XM_015278906
RefSeq - XM_015278907
RefSeq - XM_015278908
RefSeq - XM_015278909
RefSeq - XM_015278910
RefSeq - XM_015278903
swissprot - F1P1M9
Ensembl - ENSGALG00000004192
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sltmENSDARG00000052728Danio rerio
 SLTMENSG00000137776Homo sapiens
 SltmENSMUSG00000032212Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SAFB* / SAFB2* / Q80YR5* / D3YXK2* / Q14151* / Q15424* / scaffold attachment factor B* / scaffold attachment factor B2* / Scaffold attachment factor B1 *ENSGALG0000000194828
SAFB* / SAFB2* / Q80YR5* / D3YXK2* / Q14151* / Q15424* / scaffold attachment factor B* / scaffold attachment factor B2* / Scaffold attachment factor B1 *ENSGALG0000001336528


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003034  SAP domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0050684 regulation of mRNA processing IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003690 double-stranded DNA binding IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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