ENSMUSG00000032212


Mus musculus

Features
Gene ID: ENSMUSG00000032212
  
Biological name :Sltm
  
Synonyms : Q8CH25 / SAFB-like, transcription modulator / Sltm
  
Possible biological names infered from orthology : Q9NWH9
  
Species: Mus musculus
  
Chr. number: 9
Strand: 1
Band: D
Gene start: 70542754
Gene end: 70592234
  
Corresponding Affymetrix probe sets: 10586816 (MoGene1.0st)   1424452_at (Mouse Genome 430 2.0 Array)   1429624_at (Mouse Genome 430 2.0 Array)   1443426_at (Mouse Genome 430 2.0 Array)   1445720_at (Mouse Genome 430 2.0 Array)   1456683_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000149511
Ensembl peptide - ENSMUSP00000150324
Ensembl peptide - ENSMUSP00000049112
Ensembl peptide - ENSMUSP00000149059
NCBI entrez gene - 66660     See in Manteia.
MGI - MGI:1913910
RefSeq - XM_017313517
RefSeq - XM_006511350
RefSeq - XM_006511351
RefSeq - XM_006511352
RefSeq - XM_006511354
RefSeq - XM_006511355
RefSeq - XM_011242786
RefSeq - NM_025690
RefSeq - NM_026337
RefSeq - XM_006511349
RefSeq Peptide - NP_079966
RefSeq Peptide - NP_080613
swissprot - B9EI57
swissprot - A0A1L1STF9
swissprot - Q8CH25
swissprot - A0A1L1SRL0
Ensembl - ENSMUSG00000032212
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sltmENSDARG00000052728Danio rerio
 SLTMENSGALG00000004192Gallus gallus
 SLTMENSG00000137776Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Safb / D3YXK2 / Scaffold attachment factor B1 / Q15424* / scaffold attachment factor B*ENSMUSG0000007105427
Safb2 / Q80YR5 / scaffold attachment factor B2 / Q14151*ENSMUSG0000004262524


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003034  SAP domain
 IPR034780  SAFB-like transcription modulator
 IPR035979  RNA-binding domain superfamily
 IPR036361  SAP domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0050684 regulation of mRNA processing IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003690 double-stranded DNA binding IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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