ENSG00000137776


Homo sapiens

Features
Gene ID: ENSG00000137776
  
Biological name :SLTM
  
Synonyms : Q9NWH9 / SAFB like transcription modulator / SLTM
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q22.1
Gene start: 58879045
Gene end: 58933653
  
Corresponding Affymetrix probe sets: 217828_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000485870
Ensembl peptide - ENSP00000249736
Ensembl peptide - ENSP00000369887
Ensembl peptide - ENSP00000411534
Ensembl peptide - ENSP00000452805
Ensembl peptide - ENSP00000452945
Ensembl peptide - ENSP00000453065
Ensembl peptide - ENSP00000453179
Ensembl peptide - ENSP00000453371
Ensembl peptide - ENSP00000453662
Ensembl peptide - ENSP00000453711
Ensembl peptide - ENSP00000453775
Ensembl peptide - ENSP00000453987
Ensembl peptide - ENSP00000454000
NCBI entrez gene - 79811     See in Manteia.
RefSeq - XM_017022580
RefSeq - XM_011522022
RefSeq - XM_011522023
RefSeq - XM_011522024
RefSeq - XM_011522025
RefSeq - XM_011522026
RefSeq - XM_011522027
RefSeq - XM_011522028
RefSeq - XM_011522029
RefSeq - XM_011522030
RefSeq - XM_011522031
RefSeq - XM_017022576
RefSeq - XM_017022577
RefSeq - XM_017022578
RefSeq - XM_017022579
RefSeq - NM_001013843
RefSeq - NM_024755
RefSeq - XM_006720686
RefSeq - XM_006720690
RefSeq Peptide - NP_001013865
RefSeq Peptide - NP_079031
swissprot - H0YLE6
swissprot - H0YLW7
swissprot - H0YMM0
swissprot - H0YMR6
swissprot - H0YMW8
swissprot - H0YKU6
swissprot - H7BXE3
swissprot - H7C3F4
swissprot - Q9NWH9
swissprot - H0YKH2
swissprot - H0YNF3
swissprot - H0YL55
Ensembl - ENSG00000137776
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sltmENSDARG00000052728Danio rerio
 SLTMENSGALG00000004192Gallus gallus
 SltmENSMUSG00000032212Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SAFB2 / Q14151 / scaffold attachment factor B2ENSG0000013025427
SAFB / Q15424 / scaffold attachment factor BENSG0000016063327


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003034  SAP domain
 IPR034780  SAFB-like transcription modulator
 IPR035979  RNA-binding domain superfamily
 IPR036361  SAP domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0050684 regulation of mRNA processing IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003690 double-stranded DNA binding IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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