ENSG00000130254


Homo sapiens

Features
Gene ID: ENSG00000130254
  
Biological name :SAFB2
  
Synonyms : Q14151 / SAFB2 / scaffold attachment factor B2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: p13.3
Gene start: 5586999
Gene end: 5624046
  
Corresponding Affymetrix probe sets: 203280_at (Human Genome U133 Plus 2.0 Array)   32099_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000252542
Ensembl peptide - ENSP00000467981
Ensembl peptide - ENSP00000468454
Ensembl peptide - ENSP00000468505
NCBI entrez gene - 9667     See in Manteia.
OMIM - 608066
RefSeq - XM_017027522
RefSeq - XM_011528449
RefSeq - XM_011528450
RefSeq - XM_017027520
RefSeq - XM_017027521
RefSeq - NM_014649
RefSeq Peptide - NP_055464
swissprot - K7ERX3
swissprot - K7EQU4
swissprot - Q14151
Ensembl - ENSG00000130254
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 safbENSDARG00000020467Danio rerio
 ENSGALG00000013365Gallus gallus
 ENSGALG00000001948Gallus gallus
 Safb2ENSMUSG00000042625Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SAFB / Q15424 / scaffold attachment factor BENSG0000016063368
SLTM / Q9NWH9 / SAFB like transcription modulatorENSG0000013777629


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003034  SAP domain
 IPR034782  Scaffold attachment factor B2
 IPR035979  RNA-binding domain superfamily
 IPR036361  SAP domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0050684 regulation of mRNA processing IEA
 biological_processGO:0060008 Sertoli cell differentiation IEA
 biological_processGO:0060765 regulation of androgen receptor signaling pathway IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003690 double-stranded DNA binding IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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