ENSDARG00000020467


Danio rerio

Features
Gene ID: ENSDARG00000020467
  
Biological name :safb
  
Synonyms : safb / scaffold attachment factor B
  
Possible biological names infered from orthology : D3YXK2 / Q14151 / Q15424 / Q80YR5 / SAFB2 / Scaffold attachment factor B1 / scaffold attachment factor B2
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 15695746
Gene end: 15704710
  
Corresponding Affymetrix probe sets: Dr.2918.1.S1_at (Zebrafish Array)   NM_214683_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000105357
Ensembl peptide - ENSDARP00000005702
NCBI entrez gene - 321979     See in Manteia.
RefSeq - NM_214683
RefSeq Peptide - NP_999848
swissprot - E7FFA2
swissprot - Q1LV81
ZFIN ID - ZDB-GENE-030131-698
Ensembl - ENSDARG00000020467
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000013365Gallus gallus
 ENSGALG00000001948Gallus gallus
 SAFBENSG00000160633Homo sapiens
 SAFB2ENSG00000130254Homo sapiens
 SafbENSMUSG00000071054Mus musculus
 Safb2ENSMUSG00000042625Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sltm / SAFB-like, transcription modulator / Q8CH25* / Q9NWH9*ENSDARG0000005272829


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003034  SAP domain
 IPR034782  Scaffold attachment factor B2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0050684 regulation of mRNA processing IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
SUMOylation of transcription cofactors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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