ENSGALG00000001948


Gallus gallus

Features
Gene ID: ENSGALG00000001948
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : D3YXK2 / Q14151 / Q15424 / Q80YR5 / SAFB / SAFB2 / scaffold attachment factor B / Scaffold attachment factor B1 / scaffold attachment factor B2
  
Species: Gallus gallus
  
Chr. number: 28
Strand: 1
Band:
Gene start: 1350478
Gene end: 1363658
  
Corresponding Affymetrix probe sets: Gga.19312.1.S1_at (Chicken Array)   GgaAffx.25330.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049854
Ensembl peptide - ENSGALP00000003011
NCBI entrez gene - 427046     See in Manteia.
RefSeq - XM_015299722
RefSeq - XM_004948731
RefSeq - XM_004948732
RefSeq - XM_004948730
swissprot - H9KZ12
swissprot - A0A1D5PAU0
Ensembl - ENSGALG00000001948
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 safbENSDARG00000020467Danio rerio
 SAFBENSG00000160633Homo sapiens
 SAFB2ENSG00000130254Homo sapiens
 SafbENSMUSG00000071054Mus musculus
 Safb2ENSMUSG00000042625Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SAFB* / SAFB2* / Q80YR5* / D3YXK2* / Q14151* / Q15424* / scaffold attachment factor B* / scaffold attachment factor B2* / Scaffold attachment factor B1 *ENSGALG0000001336574
SLTM / SAFB like transcription modulator / Q8CH25* / Q9NWH9*ENSGALG0000000419231


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003034  SAP domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0050684 regulation of mRNA processing IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003690 double-stranded DNA binding IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
SUMOylation of transcription cofactors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000007971 SUMO2 / Q5ZJM9 / Small ubiquitin-related modifier 2 / SUMO4* / Q6EEV6* / P61957* / P61956* / small ubiquitin-like modifier 2* / small ubiquitin-like modifier 4*  / reaction
 ENSGALG00000008435 SUMO1 / Q8QGH2 / Small ubiquitin-related modifier 1 / P63166* / P63165* / small ubiquitin-like modifier 1*  / reaction / complex
 ENSGALG00000006428 UBE2I / P63283 / SUMO-conjugating enzyme UBC9 / P63280* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction






 

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