ENSDARG00000054374


Danio rerio

Features
Gene ID: ENSDARG00000054374
  
Biological name :alg13
  
Synonyms : alg13 / ALG13, UDP-N-acetylglucosaminyltransferase subunit
  
Possible biological names infered from orthology : Q9NP73
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 34233492
Gene end: 34261784
  
Corresponding Affymetrix probe sets: Dr.17317.1.A1_at (Zebrafish Array)   NM_001031838_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000112151
Ensembl peptide - ENSDARP00000136141
Ensembl peptide - ENSDARP00000064319
NCBI entrez gene - 557181     See in Manteia.
RefSeq - NM_001031838
RefSeq - XM_005161414
RefSeq - XM_005161417
RefSeq Peptide - NP_001027008
swissprot - F1QTC9
swissprot - A0A0R4IPL2
swissprot - E9QIU2
ZFIN ID - ZDB-GENE-060307-1
Ensembl - ENSDARG00000054374
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ALG13ENSG00000101901Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
otud4 / OTU deubiquitinase 4 / B2RRE7* / Q01804* / OTU domain-containing protein 4 *ENSDARG0000007781022
otud5b / OTU deubiquitinase 5b / OTUD5* / Q3U2S4* / Q96G74* / OTU deubiquitinase 5* / OTU domain-containing protein 5 *ENSDARG000000568407
Q08BW0 / otud5a / OTU deubiquitinase 5a / OTUD5* / Q3U2S4* / Q96G74* / OTU deubiquitinase 5* / OTU domain-containing protein 5 *ENSDARG000000590067


Protein motifs (from Interpro)
Interpro ID Name
 IPR002999  Tudor domain
 IPR003323  OTU domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006488 dolichol-linked oligosaccharide biosynthetic process IBA
 biological_processGO:0009953 dorsal/ventral pattern formation IMP
 cellular_componentGO:0043541 UDP-N-acetylglucosamine transferase complex IBA
 molecular_functionGO:0004577 N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity IBA


Pathways (from Reactome)
Pathway description
Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000135 notochord notochord malformed , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
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 ZFA:0001115 trunk trunk immature , abnormal
trunk decreased thickness , abnormal
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 ZFA:0001117 post-vent region post-vent region curled , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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