ENSDARG00000059006


Danio rerio

Features
Gene ID: ENSDARG00000059006
  
Biological name :otud5a
  
Synonyms : otud5a / OTU deubiquitinase 5a / Q08BW0
  
Possible biological names infered from orthology : OTUD5 / OTU deubiquitinase 5 / OTU domain-containing protein 5 / Q3U2S4 / Q96G74
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 8860902
Gene end: 8922631
  
Corresponding Affymetrix probe sets: Dr.13060.1.S1_at (Zebrafish Array)   NM_001075110_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000114334
Ensembl peptide - ENSDARP00000117557
NCBI entrez gene - 555459     See in Manteia.
RefSeq - NM_001075110
RefSeq Peptide - NP_001068578
swissprot - Q08BW0
swissprot - Z4YIP7
ZFIN ID - ZDB-GENE-030616-61
Ensembl - ENSDARG00000059006
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OTUD5ENSG00000068308Homo sapiens
 Otud5ENSMUSG00000031154Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
otud5b / OTU deubiquitinase 5b / OTUD5* / Q3U2S4* / Q96G74* / OTU deubiquitinase 5* / OTU domain-containing protein 5 *ENSDARG0000005684070
alg13 / ALG13, UDP-N-acetylglucosaminyltransferase subunit / Q9NP73*ENSDARG0000005437411
otud4 / OTU deubiquitinase 4 / B2RRE7* / Q01804* / OTU domain-containing protein 4 *ENSDARG0000007781010


Protein motifs (from Interpro)
Interpro ID Name
 IPR003323  OTU domain
 IPR031084  OTU domain-containing protein 5/Otubain-like deubiquitinase 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:0032496 response to lipopolysaccharide ISS
 biological_processGO:0070536 protein K63-linked deubiquitination ISS
 biological_processGO:0071108 protein K48-linked deubiquitination ISS
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
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 ZFA:0001117 post-vent region post-vent region curled , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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