ENSDARG00000077810


Danio rerio

Features
Gene ID: ENSDARG00000077810
  
Biological name :otud4
  
Synonyms : otud4 / OTU deubiquitinase 4
  
Possible biological names infered from orthology : B2RRE7 / OTU domain-containing protein 4 / Q01804
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 43668756
Gene end: 43692121
  
Corresponding Affymetrix probe sets: Dr.7541.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000098303
Ensembl peptide - ENSDARP00000124004
NCBI entrez gene - 327127     See in Manteia.
RefSeq - NM_001312659
RefSeq - XM_005174151
RefSeq - XM_021469751
RefSeq Peptide - NP_001299588
swissprot - F8W3X0
swissprot - F1QHE7
ZFIN ID - ZDB-GENE-030131-5338
Ensembl - ENSDARG00000077810
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OTUD4ENSGALG00000009968Gallus gallus
 OTUD4ENSG00000164164Homo sapiens
 Otud4ENSMUSG00000036990Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
alg13 / ALG13, UDP-N-acetylglucosaminyltransferase subunit / Q9NP73*ENSDARG0000005437414
Q08BW0 / otud5a / OTU deubiquitinase 5a / OTUD5* / Q3U2S4* / Q96G74* / OTU deubiquitinase 5* / OTU domain-containing protein 5 *ENSDARG000000590064
otud5b / OTU deubiquitinase 5b / OTUD5* / Q3U2S4* / Q96G74* / OTU deubiquitinase 5* / OTU domain-containing protein 5 *ENSDARG000000568404


Protein motifs (from Interpro)
Interpro ID Name
 IPR002999  Tudor domain
 IPR003323  OTU domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009953 dorsal/ventral pattern formation IGI
 biological_processGO:0021549 cerebellum development IMP
 biological_processGO:0043010 camera-type eye development IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000100 cerebellum cerebellum decreased size , abnormal
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 ZFA:0000155 somite somite fused with somite , abnormal
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 ZFA:0000445 optic tectum optic tectum decreased size , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
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 ZFA:0001114 head head malformed , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
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 ZFA:0001117 post-vent region post-vent region curled , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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