ENSDARG00000054610


Danio rerio

Features
Gene ID: ENSDARG00000054610
  
Biological name :coro1a
  
Synonyms : coro1a / coronin, actin binding protein, 1A
  
Possible biological names infered from orthology : coronin 1A / O89053 / P31146
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 30926364
Gene end: 30941362
  
Corresponding Affymetrix probe sets: Dr.9515.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000071301
NCBI entrez gene - 100002113     See in Manteia.
RefSeq - NM_201114
RefSeq Peptide - NP_957408
swissprot - Q7SX58
ZFIN ID - ZDB-GENE-030131-9512
Ensembl - ENSDARG00000054610
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CORO1AENSG00000102879Homo sapiens
 Coro1aENSMUSG00000030707Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
coro1cb / coronin, actin binding protein, 1Cb / CORO1C* / Q9ULV4* / Q9WUM4* / coronin 1C*ENSDARG0000002119367
coro1ca / coronin, actin binding protein, 1Ca / CORO1C* / Q9ULV4* / Q9WUM4* / coronin 1C*ENSDARG0000003559867
coro1b / coronin, actin binding protein, 1B / Q9BR76* / Q9WUM3* / coronin 1B*ENSDARG0000000866060
coro6 / coronin 6 / Q6QEF8* / Q920M5*ENSDARG0000010227258
coro2a / coronin, actin binding protein, 2A / Q8C0P5* / Q92828* / coronin 2A*ENSDARG0000000521044
coro2ba / coronin, actin binding protein, 2Ba / CORO2B* / Q8BH44* / Q9UQ03* / coronin 2B*ENSDARG0000007944044
coro2bb / coronin, actin binding protein, 2BbENSDARG0000006360444
si:ch73-106g13.1 / CORO2A* / Q8C0P5* / Q92828* / coronin 2A*ENSDARG0000009596939
coro7 / coronin 7 / P57737* / Q9D2V7* / CORO7-PAM16* / CORO7-PAM16 readthrough*ENSDARG0000008961631


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015048  Domain of unknown function DUF1899
 IPR015505  Coronin
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR029508  Coronin 1A


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001654 eye development IMP
 biological_processGO:0007420 brain development IMP
 biological_processGO:0021952 central nervous system projection neuron axonogenesis IMP
 biological_processGO:0030036 actin cytoskeleton organization IBA
 cellular_componentGO:0015629 actin cytoskeleton IBA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
Show

 ZFA:0000029 hindbrain hindbrain axon decreased length , abnormal
hindbrain axon disorganized , abnormal
Show

 ZFA:0000107 eye eye morphology , abnormal
Show

 ZFA:0000109 forebrain forebrain axon decreased size , abnormal
forebrain axon disorganized , abnormal
Show

 ZFA:0001094 whole organism whole organism movement quality , abnormal
whole organism pigmented , abnormal
Show

 ZFA:0001117 post-vent region post-vent region shape , abnormal
post-vent region decreased length , abnormal
Show

 ZFA:0009090 pigment cell pigment cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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