ENSDARG00000021193


Danio rerio

Features
Gene ID: ENSDARG00000021193
  
Biological name :coro1cb
  
Synonyms : coro1cb / coronin, actin binding protein, 1Cb
  
Possible biological names infered from orthology : CORO1C / coronin 1C / Q9ULV4 / Q9WUM4
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 31880586
Gene end: 31904562
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000113857
Ensembl peptide - ENSDARP00000145198
Ensembl peptide - ENSDARP00000121763
Ensembl peptide - ENSDARP00000117078
NCBI entrez gene - 562849     See in Manteia.
swissprot - E9QIL5
swissprot - E9QI46
swissprot - E9QEX2
ZFIN ID - ZDB-GENE-030131-418
Ensembl - ENSDARG00000021193
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CORO1CENSGALG00000004901Gallus gallus
 CORO1CENSG00000110880Homo sapiens
 Coro1cENSMUSG00000004530Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
coro1ca / coronin, actin binding protein, 1Ca / CORO1C* / Q9ULV4* / Q9WUM4* / coronin 1C*ENSDARG0000003559885
coro6 / coronin 6 / Q6QEF8* / Q920M5*ENSDARG0000010227265
coro1a / coronin, actin binding protein, 1A / O89053* / P31146* / coronin 1A*ENSDARG0000005461065
coro1b / coronin, actin binding protein, 1B / Q9BR76* / Q9WUM3* / coronin 1B*ENSDARG0000000866061
coro2a / coronin, actin binding protein, 2A / Q8C0P5* / Q92828* / coronin 2A*ENSDARG0000000521043
coro2ba / coronin, actin binding protein, 2Ba / CORO2B* / Q8BH44* / Q9UQ03* / coronin 2B*ENSDARG0000007944043
coro2bb / coronin, actin binding protein, 2BbENSDARG0000006360441
si:ch73-106g13.1 / CORO2A* / Q8C0P5* / Q92828* / coronin 2A*ENSDARG0000009596936
coro7 / coronin 7 / P57737* / Q9D2V7* / CORO7-PAM16* / CORO7-PAM16 readthrough*ENSDARG0000008961632


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015048  Domain of unknown function DUF1899
 IPR015505  Coronin
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR027333  Coronin 1C


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030036 actin cytoskeleton organization IEA
 cellular_componentGO:0015629 actin cytoskeleton IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr