ENSDARG00000058285


Danio rerio

Features
Gene ID: ENSDARG00000058285
  
Biological name :cpt1b
  
Synonyms : carnitine palmitoyltransferase 1B (muscle) / cpt1b
  
Possible biological names infered from orthology : Carnitine O-palmitoyltransferase 1, muscle isoform / carnitine palmitoyltransferase 1B / carnitine palmitoyltransferase 1C / CPT1C / Mus musculus carnitine palmitoyltransferase 1c (Cpt1c), transcript variant 3, mRNA. / Q8BGD5 / Q8TCG5 / Q924X2 / Q92523
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 8340886
Gene end: 8367566
  
Corresponding Affymetrix probe sets: Dr.12241.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000075575
Ensembl peptide - ENSDARP00000077856
NCBI entrez gene - 449677     See in Manteia.
RefSeq - NM_001328192
RefSeq Peptide - NP_001315121
swissprot - F6P7Z9
swissprot - Q1LXU0
ZFIN ID - ZDB-GENE-041010-9
Ensembl - ENSDARG00000058285
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CPT1BENSG00000205560Homo sapiens
 CPT1CENSG00000169169Homo sapiens
 Cpt1bENSMUSG00000078937Mus musculus
 Cpt1cENSMUSG00000007783Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cpt1ab / carnitine palmitoyltransferase 1Ab (liver) / CPT1A* / P97742* / P50416* / carnitine palmitoyltransferase 1A* / Carnitine O-palmitoyltransferase 1, liver isoform *ENSDARG0000006205466
cpt1aa / carnitine palmitoyltransferase 1Aa (liver) / CPT1A* / P97742* / P50416* / carnitine palmitoyltransferase 1A* / Carnitine O-palmitoyltransferase 1, liver isoform *ENSDARG0000005977064
cpt1cb / carnitine palmitoyltransferase 1CbENSDARG0000003794362
CABZ01055347.1ENSDARG0000006166060
crata / carnitine O-acetyltransferase a / CRAT* / P47934* / P43155* / carnitine acetyltransferase* / carnitine O-acetyltransferase*ENSDARG0000004024824
chata / B2ZGJ1 / choline O-acetyltransferase a / CHAT* / P28329* / choline O-acetyltransferase*ENSDARG0000001585423
crot / carnitine O-octanoyltransferase / Q9DC50* / Q9UKG9* / Peroxisomal carnitine O-octanoyltransferase *ENSDARG0000004035223
zgc:154046 / CRAT* / P43155* / P47934* / carnitine acetyltransferase* / carnitine O-acetyltransferase*ENSDARG0000001654522
cratb / carnitine O-acetyltransferase bENSDARG0000009878220


Protein motifs (from Interpro)
Interpro ID Name
 IPR000542  Acyltransferase ChoActase/COT/CPT
 IPR032476  Carnitine O-palmitoyltransferase, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009617 response to bacterium IDA
 biological_processGO:0061959 response to (R)-carnitine IEP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0016746 transferase activity, transferring acyl groups IEA


Pathways (from Reactome)
Pathway description
Import of palmitoyl-CoA into the mitochondrial matrix
Signaling by Retinoic Acid


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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