ENSDARG00000058448


Danio rerio

Features
Gene ID: ENSDARG00000058448
  
Biological name :zrsr2
  
Synonyms : zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 / zrsr2
  
Possible biological names infered from orthology : Q15696 / Q64707 / zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1 / Zrsr1
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 12732247
Gene end: 12744082
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000152352
Ensembl peptide - ENSDARP00000075762
NCBI entrez gene - 100005490     See in Manteia.
RefSeq - XM_001920527
RefSeq - XM_021479948
swissprot - E7F2A1
ZFIN ID - ZDB-GENE-030131-1495
Ensembl - ENSDARG00000058448
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZRSR2ENSGALG00000016552Gallus gallus
 ZRSR2ENSG00000169249Homo sapiens
 Zrsr1ENSMUSG00000044068Mus musculus
 Zrsr2ENSMUSG00000031370Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
u2af1 / U2 small nuclear RNA auxiliary factor 1 / Q9D883* / P0DN76* / Q01081* / U2AF1L5* / U2 small nuclear RNA auxiliary factor 1 like 5* / U2 small nuclear ribonucleoprotein auxiliary fac...ENSDARG0000001532513


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000571  Zinc finger, CCCH-type
 IPR003954  RNA recognition motif domain, eukaryote
 IPR009145  U2 auxiliary factor small subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005681 spliceosomal complex IBA
 cellular_componentGO:0089701 U2AF IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0030628 pre-mRNA 3"-splice site binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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