ENSDARG00000059972


Danio rerio

Features
Gene ID: ENSDARG00000059972
  
Biological name :raly
  
Synonyms : raly / RALY heterogeneous nuclear ribonucleoprotein
  
Possible biological names infered from orthology : hnRNP-associated with lethal yellow / Q64012 / Q9UKM9
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 50021410
Gene end: 50204262
  
Corresponding Affymetrix probe sets: Dr.16788.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000118719
Ensembl peptide - ENSDARP00000139787
Ensembl peptide - ENSDARP00000078434
NCBI entrez gene - 402903     See in Manteia.
RefSeq - NM_205610
RefSeq Peptide - NP_991173
swissprot - F1QAY0
swissprot - F1QKR6
ZFIN ID - ZDB-GENE-041010-127
Ensembl - ENSDARG00000059972
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RALYENSGALG00000033696Gallus gallus
 RALYENSG00000125970Homo sapiens
 RalyENSMUSG00000027593Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:55733 / HNRNPC* / B7ZW38* / B2RXH8* / O60812* / P07910* / P0DMR1* / HNRNPCL4* / HNRNPCL1* / HNRNPCL2* / HNRNPCL3* / heterogeneous nuclear ribonucleoprotein C-like 4* / heterogeneous nuc...ENSDARG0000010384544
hnrnpc / heterogeneous nuclear ribonucleoprotein C / B2RXH8* / B7ZW38* / O60812* / P07910* / P0DMR1* / HNRNPCL3* / HNRNPCL4* / HNRNPCL1* / HNRNPCL2* / heterogeneous nuclear ribonucleoprotei...ENSDARG0000005381044
ralyl / RALY RNA binding protein like / Q86SE5*ENSDARG0000009029228


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR017347  Heterogeneous nuclear ribonucleoprotein C
 IPR034502  Raly, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr