ENSMUSG00000027593


Mus musculus

Features
Gene ID: ENSMUSG00000027593
  
Biological name :Raly
  
Synonyms : hnRNP-associated with lethal yellow / Q64012 / Raly
  
Possible biological names infered from orthology : Q9UKM9 / RALY heterogeneous nuclear ribonucleoprotein
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: H1
Gene start: 154791096
Gene end: 154867261
  
Corresponding Affymetrix probe sets: 10477583 (MoGene1.0st)   1418573_a_at (Mouse Genome 430 2.0 Array)   1430465_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000114185
Ensembl peptide - ENSMUSP00000112090
Ensembl peptide - ENSMUSP00000119108
Ensembl peptide - ENSMUSP00000119126
Ensembl peptide - ENSMUSP00000029120
Ensembl peptide - ENSMUSP00000058105
Ensembl peptide - ENSMUSP00000105323
NCBI entrez gene - 19383     See in Manteia.
MGI - MGI:97850
RefSeq - XM_017316631
RefSeq - NM_001139511
RefSeq - NM_001139512
RefSeq - NM_001139513
RefSeq - NM_023130
RefSeq - XM_006499013
RefSeq - XM_006499014
RefSeq - XM_006499015
RefSeq - XM_006499016
RefSeq Peptide - NP_001132985
RefSeq Peptide - NP_075619
RefSeq Peptide - NP_001132983
RefSeq Peptide - NP_001132984
swissprot - Q3U3F6
swissprot - Q64012
swissprot - A2AU62
swissprot - A2AU61
swissprot - A2AU60
Ensembl - ENSMUSG00000027593
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ralyENSDARG00000059972Danio rerio
 RALYENSGALG00000033696Gallus gallus
 RALYENSG00000125970Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ralyl / Q8BTF8 / RNA-binding Raly-like protein / Q86SE5* / RALY RNA binding protein like*ENSMUSG0000003971753
Hnrnpc / Q9Z204 / Heteroous nuclear ribonucleoproteins C1/C2 / P07910* / heterogeneous nuclear ribonucleoprotein C (C1/C2)*ENSMUSG0000006037345


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR017347  Heterogeneous nuclear ribonucleoprotein C
 IPR034502  Raly, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:1903506 regulation of nucleic acid-templated transcription IMP
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome ISO
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003712 transcription coregulator activity IMP
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Atp8a2wl/Atp8a2+
Genetic Background: Not Specified

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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