ENSDARG00000103845


Danio rerio

Features
Gene ID: ENSDARG00000103845
  
Biological name :zgc:55733
  
Synonyms : zgc:55733
  
Possible biological names infered from orthology : B2RXH8 / B7ZW38 / heterogeneous nuclear ribonucleoprotein C (C1/C2) / heterogeneous nuclear ribonucleoprotein C-like 1 / heterogeneous nuclear ribonucleoprotein C-like 2 / heterogeneous nuclear ribonucleoprotein C-like 3 / heterogeneous nuclear ribonucleoprotein C-like 4 / Heteroous nuclear ribonucleoproteins C1/C2 / HNRNPC / HNRNPCL1 / HNRNPCL2 / HNRNPCL3 / HNRNPCL4 / O60812 / P07910 / P0DMR1 / Q9Z204
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 4085115
Gene end: 4125067
  
Corresponding Affymetrix probe sets: Dr.9353.1.S1_at (Zebrafish Array)   NM_200993_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000134136
Ensembl peptide - ENSDARP00000142800
Ensembl peptide - ENSDARP00000142125
Ensembl peptide - ENSDARP00000142065
NCBI entrez gene - 393968     See in Manteia.
RefSeq - NM_200993
RefSeq - XM_021477445
RefSeq Peptide - NP_957287
swissprot - A0A0R4IKH3
swissprot - A0A1D5NSI5
swissprot - A0A140LFU9
swissprot - A0A140LFP2
ZFIN ID - ZDB-GENE-040426-791
Ensembl - ENSDARG00000103845
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 B2RXH8ENSG00000275774Homo sapiens
 B7ZW38ENSG00000277058Homo sapiens
 HNRNPCENSG00000092199Homo sapiens
 O60812ENSG00000179172Homo sapiens
 P0DMR1ENSG00000179412Homo sapiens
 HnrnpcENSMUSG00000060373Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hnrnpc / heterogeneous nuclear ribonucleoprotein C / B2RXH8* / B7ZW38* / O60812* / P07910* / P0DMR1* / HNRNPCL3* / HNRNPCL4* / HNRNPCL1* / HNRNPCL2* / heterogeneous nuclear ribonucleoprotei...ENSDARG0000005381080
raly / RALY heterogeneous nuclear ribonucleoprotein / Q64012* / Q9UKM9* / hnRNP-associated with lethal yellow*ENSDARG0000005997242
ralyl / RALY RNA binding protein like / Q86SE5*ENSDARG0000009029225


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR017347  Heterogeneous nuclear ribonucleoprotein C


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
SUMOylation of RNA binding proteins
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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