ENSDARG00000053810


Danio rerio

Features
Gene ID: ENSDARG00000053810
  
Biological name :hnrnpc
  
Synonyms : heterogeneous nuclear ribonucleoprotein C / hnrnpc
  
Possible biological names infered from orthology : B2RXH8 / B7ZW38 / heterogeneous nuclear ribonucleoprotein C (C1/C2) / heterogeneous nuclear ribonucleoprotein C-like 1 / heterogeneous nuclear ribonucleoprotein C-like 2 / heterogeneous nuclear ribonucleoprotein C-like 3 / heterogeneous nuclear ribonucleoprotein C-like 4 / Heteroous nuclear ribonucleoproteins C1/C2 / HNRNPCL1 / HNRNPCL2 / HNRNPCL3 / HNRNPCL4 / O60812 / P07910 / P0DMR1 / Q9Z204
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 38025260
Gene end: 38034190
  
Corresponding Affymetrix probe sets: Dr.6808.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000070385
NCBI entrez gene - 406352     See in Manteia.
RefSeq - XM_017358046
RefSeq - NM_213079
RefSeq Peptide - NP_998244
swissprot - Q803J4
ZFIN ID - ZDB-GENE-040426-2043
Ensembl - ENSDARG00000053810
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 B2RXH8ENSG00000275774Homo sapiens
 B7ZW38ENSG00000277058Homo sapiens
 HNRNPCENSG00000092199Homo sapiens
 O60812ENSG00000179172Homo sapiens
 P0DMR1ENSG00000179412Homo sapiens
 HnrnpcENSMUSG00000060373Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:55733 / HNRNPC* / B7ZW38* / B2RXH8* / O60812* / P07910* / P0DMR1* / HNRNPCL4* / HNRNPCL1* / HNRNPCL2* / HNRNPCL3* / heterogeneous nuclear ribonucleoprotein C-like 4* / heterogeneous nuc...ENSDARG0000010384573
raly / RALY heterogeneous nuclear ribonucleoprotein / Q64012* / Q9UKM9* / hnRNP-associated with lethal yellow*ENSDARG0000005997239
ralyl / RALY RNA binding protein like / Q86SE5*ENSDARG0000009029222


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR017347  Heterogeneous nuclear ribonucleoprotein C


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
SUMOylation of RNA binding proteins
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr