ENSDARG00000060411


Danio rerio

Features
Gene ID: ENSDARG00000060411
  
Biological name :ddx28
  
Synonyms : ddx28 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
  
Possible biological names infered from orthology : DEAD-box helicase 28 / Probable ATP-dependent RNA helicase DDX28 / Q9CWT6 / Q9NUL7
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 34963748
Gene end: 34965654
  
Corresponding Affymetrix probe sets: Dr.15079.1.S1_at (Zebrafish Array)   NM_001077332_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000079522
NCBI entrez gene - 768189     See in Manteia.
RefSeq - NM_001077332
RefSeq Peptide - NP_001070800
swissprot - F1R080
ZFIN ID - ZDB-GENE-061013-64
Ensembl - ENSDARG00000060411
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000003415Gallus gallus
 DDX28ENSG00000182810Homo sapiens
 Ddx28ENSMUSG00000045538Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ddx47 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 / Q9CWX9* / Q9H0S4* / DEAD-box helicase 47* / Probable ATP-dependent RNA helicase DDX47 *ENSDARG0000010235311


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr