ENSMUSG00000045538


Mus musculus

Features
Gene ID: ENSMUSG00000045538
  
Biological name :Ddx28
  
Synonyms : Ddx28 / Probable ATP-dependent RNA helicase DDX28 / Q9CWT6
  
Possible biological names infered from orthology : DEAD-box helicase 28 / Q9NUL7
  
Species: Mus musculus
  
Chr. number: 8
Strand: -1
Band: D3
Gene start: 106009621
Gene end: 106011882
  
Corresponding Affymetrix probe sets: 10581450 (MoGene1.0st)   1428702_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000058950
NCBI entrez gene - 71986     See in Manteia.
MGI - MGI:1919236
RefSeq - NM_028038
RefSeq Peptide - NP_082314
swissprot - Q9CWT6
Ensembl - ENSMUSG00000045538
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx28ENSDARG00000060411Danio rerio
 ENSGALG00000003415Gallus gallus
 DDX28ENSG00000182810Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ddx47 / Q9CWX9 / Probable ATP-dependent RNA helicase DDX47 / Q9H0S4* / DEAD-box helicase 47*ENSMUSG0000003020424


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 biological_processGO:0042254 ribosome biogenesis IEA
 biological_processGO:1902775 mitochondrial large ribosomal subunit assembly IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005739 mitochondrion ISO
 cellular_componentGO:0005759 mitochondrial matrix IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0035770 ribonucleoprotein granule IEA
 cellular_componentGO:0042645 mitochondrial nucleoid ISS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0019843 rRNA binding ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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