ENSMUSG00000030204


Mus musculus

Features
Gene ID: ENSMUSG00000030204
  
Biological name :Ddx47
  
Synonyms : Ddx47 / Probable ATP-dependent RNA helicase DDX47 / Q9CWX9
  
Possible biological names infered from orthology : DEAD-box helicase 47 / Q9H0S4
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: G1
Gene start: 135011612
Gene end: 135023776
  
Corresponding Affymetrix probe sets: 10542321 (MoGene1.0st)   1423752_at (Mouse Genome 430 2.0 Array)   1438380_at (Mouse Genome 430 2.0 Array)   1438381_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000115183
Ensembl peptide - ENSMUSP00000145463
Ensembl peptide - ENSMUSP00000145232
Ensembl peptide - ENSMUSP00000145139
Ensembl peptide - ENSMUSP00000144959
Ensembl peptide - ENSMUSP00000119231
Ensembl peptide - ENSMUSP00000032326
NCBI entrez gene - 67755     See in Manteia.
MGI - MGI:1915005
RefSeq - NM_026360
RefSeq Peptide - NP_080636
swissprot - A0A0N4SVK2
swissprot - A0A0N4SV55
swissprot - F6QKD2
swissprot - Q4VBG1
swissprot - D3YWF9
swissprot - Q9CWX9
swissprot - A0A0N4SWC5
swissprot - A0A0N4SVT1
Ensembl - ENSMUSG00000030204
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx47ENSDARG00000102353Danio rerio
 DDX47ENSGALG00000011794Gallus gallus
 DDX47ENSG00000213782Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ddx28 / Q9CWT6 / Probable ATP-dependent RNA helicase DDX28 / Q9NUL7* / DEAD-box helicase 28*ENSMUSG0000004553828


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006364 rRNA processing ISO
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0008380 RNA splicing ISO
 biological_processGO:0008625 extrinsic apoptotic signaling pathway via death domain receptors IEA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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