ENSGALG00000011794


Gallus gallus

Features
Gene ID: ENSGALG00000011794
  
Biological name :DDX47
  
Synonyms : DDX47 / DEAD-box helicase 47
  
Possible biological names infered from orthology : Probable ATP-dependent RNA helicase DDX47 / Q9CWX9 / Q9H0S4
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 48224634
Gene end: 48233521
  
Corresponding Affymetrix probe sets: Gga.13941.1.A1_at (Chicken Array)   Gga.13941.1.S1_at (Chicken Array)   Gga.16575.1.S1_s_at (Chicken Array)   GgaAffx.11927.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000019220
NCBI entrez gene - 417959     See in Manteia.
RefSeq - NM_001007853
RefSeq Peptide - NP_001007854
swissprot - Q5ZLB0
Ensembl - ENSGALG00000011794
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx47ENSDARG00000102353Danio rerio
 DDX47ENSG00000213782Homo sapiens
 Ddx47ENSMUSG00000030204Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DDX28* / Q9CWT6* / Q9NUL7* / DEAD-box helicase 28* / Probable ATP-dependent RNA helicase DDX28 *ENSGALG0000000341511


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0008625 extrinsic apoptotic signaling pathway via death domain receptors IEA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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