ENSDARG00000061504


Danio rerio

Features
Gene ID: ENSDARG00000061504
  
Biological name :kdm4c
  
Synonyms : kdm4c / lysine (K)-specific demethylase 4C
  
Possible biological names infered from orthology : lysine demethylase 4C / Mus musculus lysine (K)-specific demethylase 4C (Kdm4c), transcript variant 3, mRNA. / Q8VCD7 / Q9H3R0
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 21937201
Gene end: 21971913
  
Corresponding Affymetrix probe sets: Dr.17381.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000082162
NCBI entrez gene - 570194     See in Manteia.
RefSeq - NM_001083851
RefSeq Peptide - NP_001077320
swissprot - F1QPD2
ZFIN ID - ZDB-GENE-070209-38
Ensembl - ENSDARG00000061504
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KDM4CENSGALG00000020557Gallus gallus
 KDM4CENSG00000107077Homo sapiens
 Kdm4cENSMUSG00000028397Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
kdm4aa / lysine (K)-specific demethylase 4A, genome duplicate a / KDM4A* / O75164* / Q8BW72* / AL451062.3* / lysine demethylase 4A* / Lysine-specific demethylase 4A *ENSDARG0000001878236
kdm4b / lysine (K)-specific demethylase 4B / O94953* / Q91VY5* / lysine demethylase 4B* / Lysine-specific demethylase 4B *ENSDARG0000009967534
kdm4ab / lysine (K)-specific demethylase 4A, genome duplicate b / KDM4A* / O75164* / Q8BW72* / AL451062.3* / lysine demethylase 4A* / Lysine-specific demethylase 4A *ENSDARG0000001910334


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR002999  Tudor domain
 IPR003347  JmjC domain
 IPR003349  JmjN domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR034732  Extended PHD (ePHD) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048514 blood vessel morphogenesis IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001285 intersegmental vessel intersegmental vessel decreased length , abnormal
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 ZFA:0005025 dorsal longitudinal anastomotic vessel dorsal longitudinal anastomotic vessel absent , abnormal
dorsal longitudinal anastomotic vessel aplastic , abnormal
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 ZFA:0005314 blood vessel blood vessel decreased area , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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