ENSGALG00000020557


Gallus gallus

Features
Gene ID: ENSGALG00000020557
  
Biological name :KDM4C
  
Synonyms : KDM4C / lysine demethylase 4C
  
Possible biological names infered from orthology : Mus musculus lysine (K)-specific demethylase 4C (Kdm4c), transcript variant 3, mRNA. / Q8VCD7 / Q9H3R0
  
Species: Gallus gallus
  
Chr. number: Z
Strand: 1
Band:
Gene start: 28100525
Gene end: 28396866
  
Corresponding Affymetrix probe sets: Gga.11801.1.S1_a_at (Chicken Array)   Gga.9263.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000032199
NCBI entrez gene - 427231     See in Manteia.
RefSeq - XM_004949080
RefSeq - XM_015280207
RefSeq - XM_015280208
RefSeq - XM_015280209
RefSeq - XM_003642992
swissprot - F1N9S1
Ensembl - ENSGALG00000020557
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 kdm4cENSDARG00000061504Danio rerio
 KDM4CENSG00000107077Homo sapiens
 Kdm4cENSMUSG00000028397Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
KDM4A* / O75164* / Q8BW72* / AL451062.3* / lysine demethylase 4A* / Lysine-specific demethylase 4A *ENSGALG0000001007433
KDM4B* / O94953* / Q91VY5* / lysine demethylase 4B* / Lysine-specific demethylase 4B *ENSGALG0000003459218
KDM4A* / O75164* / Q8BW72* / AL451062.3* / lysine demethylase 4A* / Lysine-specific demethylase 4A *ENSGALG0000004164715


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR002999  Tudor domain
 IPR003347  JmjC domain
 IPR003349  JmjN domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001825 blastocyst formation IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0033169 histone H3-K9 demethylation IEA
 biological_processGO:0070544 histone H3-K36 demethylation IEA
 biological_processGO:1900113 negative regulation of histone H3-K9 trimethylation IEA
 biological_processGO:2000036 regulation of stem cell population maintenance IEA
 biological_processGO:2000736 regulation of stem cell differentiation IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005721 pericentric heterochromatin IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0032452 histone demethylase activity IEA
 molecular_functionGO:0032454 histone demethylase activity (H3-K9 specific) IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0050681 androgen receptor binding IEA
 molecular_functionGO:0051864 histone demethylase activity (H3-K36 specific) IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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