ENSDARG00000062402


Danio rerio

Features
Gene ID: ENSDARG00000062402
  
Biological name :frem1b
  
Synonyms : Fras1 related extracellular matrix 1b / frem1b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 17118225
Gene end: 17191525
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000120306
Ensembl peptide - ENSDARP00000140130
Ensembl peptide - ENSDARP00000084650
NCBI entrez gene - 557221     See in Manteia.
RefSeq - XM_009296245
swissprot - A0A0R4IY99
swissprot - F1R2T2
swissprot - Q1L984
ZFIN ID - ZDB-GENE-050208-783
Ensembl - ENSDARG00000062402
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
frem1a / Fras1 related extracellular matrix 1a / FREM1* / Q5H8C1* / FRAS1 related extracellular matrix 1*ENSDARG0000006947344
frem3 / Fras1 related extracellular matrix 3 / P0C091*ENSDARG0000007467730
frem2a / Fras1 related extracellular matrix protein 2a / FREM2* / Q5SZK8* / Q6NVD0* / FRAS1 related extracellular matrix protein 2*ENSDARG0000007685629
frem2b / Fras1 related extracellular matrix protein 2b / FREM2* / Q5SZK8* / Q6NVD0* / FRAS1 related extracellular matrix protein 2*ENSDARG0000010262629
fras1 / Fraser extracellular matrix complex subunit 1 / Q80T14* / Q86XX4* / Extracellular matrix protein FRAS1 *ENSDARG0000005461922
si:dkey-193c22.2 / BC067074* / cDNA sequence BC067074*ENSDARG0000007673517
cspg4 / chondroitin sulfate proteoglycan 4 / Q6UVK1* / Q8VHY0*ENSDARG0000007822716
si:dkeyp-41f9.3 / BC067074* / cDNA sequence BC067074*ENSDARG000000756007


Protein motifs (from Interpro)
Interpro ID Name
 IPR001304  C-type lectin-like
 IPR003644  Na-Ca exchanger/integrin-beta4
 IPR013783  Immunoglobulin-like fold
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007154 cell communication IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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