ENSDARG00000069473


Danio rerio

Features
Gene ID: ENSDARG00000069473
  
Biological name :frem1a
  
Synonyms : Fras1 related extracellular matrix 1a / frem1a
  
Possible biological names infered from orthology : FRAS1 related extracellular matrix 1 / FRAS1-related extracellular matrix protein 1 / FREM1 / Q5H8C1 / Q684R7
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 69653981
Gene end: 69728526
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000084598
NCBI entrez gene - 100216326     See in Manteia.
RefSeq - NM_001190308
RefSeq Peptide - NP_001177237
swissprot - F1R4B2
swissprot - A0A0R4IN91
ZFIN ID - ZDB-GENE-081119-1
Ensembl - ENSDARG00000069473
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FREM1ENSGALG00000005426Gallus gallus
 FREM1ENSG00000164946Homo sapiens
 Frem1ENSMUSG00000059049Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
frem1b / Fras1 related extracellular matrix 1bENSDARG0000006240244
frem2a / Fras1 related extracellular matrix protein 2a / FREM2* / Q5SZK8* / Q6NVD0* / FRAS1 related extracellular matrix protein 2*ENSDARG0000007685629
frem3 / Fras1 related extracellular matrix 3 / P0C091*ENSDARG0000007467729
frem2b / Fras1 related extracellular matrix protein 2b / FREM2* / Q5SZK8* / Q6NVD0* / FRAS1 related extracellular matrix protein 2*ENSDARG0000010262628
fras1 / Fraser extracellular matrix complex subunit 1 / Q80T14* / Q86XX4* / Extracellular matrix protein FRAS1 *ENSDARG0000005461922
si:dkey-193c22.2 / BC067074* / cDNA sequence BC067074*ENSDARG0000007673515
cspg4 / chondroitin sulfate proteoglycan 4 / Q6UVK1* / Q8VHY0*ENSDARG0000007822715
si:dkeyp-41f9.3 / BC067074* / cDNA sequence BC067074*ENSDARG000000756007


Protein motifs (from Interpro)
Interpro ID Name
 IPR001304  C-type lectin-like
 IPR003644  Na-Ca exchanger/integrin-beta4
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR032825  FRAS1-related extracellular matrix protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007154 cell communication IEA
 biological_processGO:0007160 cell-matrix adhesion IEA
 biological_processGO:0033333 fin development IMP
 biological_processGO:0033334 fin morphogenesis IMP
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000040 median fin fold median fin fold degenerate , abnormal
median fin fold rough , abnormal
median fin fold cell circular , abnormal
median fin fold blistered , abnormal
Show

 ZFA:0000108 fin fin degenerate , abnormal
fin necrotic , abnormal
Show

 ZFA:0000292 surface structure surface structure quality , abnormal
Show

 ZFA:0000368 integument integument cell circular , abnormal
Show

 ZFA:0001058 caudal fin caudal fin has fewer parts of type lepidotrichium , abnormal
caudal fin degenerate , abnormal
Show

 ZFA:0001069 ventral fin fold ventral fin fold rough , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin has fewer parts of type lepidotrichium , abnormal
pectoral fin degenerate , abnormal
pectoral fin quality , abnormal
Show

 ZFA:0001162 anal fin anal fin has fewer parts of type lepidotrichium , abnormal
Show

 ZFA:0001173 dorsal fin dorsal fin has fewer parts of type lepidotrichium , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr