ENSDARG00000078227


Danio rerio

Features
Gene ID: ENSDARG00000078227
  
Biological name :cspg4
  
Synonyms : chondroitin sulfate proteoglycan 4 / cspg4
  
Possible biological names infered from orthology : Q6UVK1 / Q8VHY0
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 6507141
Gene end: 6629281
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000101583
Ensembl peptide - ENSDARP00000144807
NCBI entrez gene - 560393     See in Manteia.
RefSeq - XM_001923422
swissprot - E7FCN9
ZFIN ID - ZDB-GENE-050519-1
Ensembl - ENSDARG00000078227
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CSPG4ENSGALG00000002678Gallus gallus
 CSPG4ENSG00000173546Homo sapiens
 Cspg4ENSMUSG00000032911Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-193c22.2 / BC067074* / cDNA sequence BC067074*ENSDARG0000007673531
frem2a / Fras1 related extracellular matrix protein 2a / FREM2* / Q5SZK8* / Q6NVD0* / FRAS1 related extracellular matrix protein 2*ENSDARG0000007685618
frem3 / Fras1 related extracellular matrix 3 / P0C091*ENSDARG0000007467717
frem2b / Fras1 related extracellular matrix protein 2b / FREM2* / Q5SZK8* / Q6NVD0* / FRAS1 related extracellular matrix protein 2*ENSDARG0000010262617
fras1 / Fraser extracellular matrix complex subunit 1 / Q80T14* / Q86XX4* / Extracellular matrix protein FRAS1 *ENSDARG0000005461916
frem1b / Fras1 related extracellular matrix 1bENSDARG0000006240215
frem1a / Fras1 related extracellular matrix 1a / FREM1* / Q5H8C1* / FRAS1 related extracellular matrix 1*ENSDARG0000006947315
si:dkeyp-41f9.3 / BC067074* / cDNA sequence BC067074*ENSDARG0000007560012


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis
Chondroitin sulfate biosynthesis
Dermatan sulfate biosynthesis
CS/DS degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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