ENSDARG00000062987


Danio rerio

Features
Gene ID: ENSDARG00000062987
  
Biological name :tyw1
  
Synonyms : tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) / tyw1
  
Possible biological names infered from orthology : Q8BJM7 / Q9NV66 / tRNA-yW synthesizing protein 1 homolog / tRNA-yW synthesizing protein 1 homolog B / TYW1B
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 16739160
Gene end: 16872600
  
Corresponding Affymetrix probe sets: Dr.4252.1.A1_at (Zebrafish Array)   NM_001077156_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000117225
Ensembl peptide - ENSDARP00000126892
NCBI entrez gene - 562076     See in Manteia.
RefSeq - NM_001077156
RefSeq - XM_017350979
RefSeq Peptide - NP_001070624
swissprot - R4GEH9
swissprot - F1QPL0
ZFIN ID - ZDB-GENE-060929-688
Ensembl - ENSDARG00000062987
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000001110Gallus gallus
 TYW1ENSG00000198874Homo sapiens
 TYW1BENSG00000277149Homo sapiens
 Tyw1ENSMUSG00000056310Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001094  Flavodoxin-like
 IPR007197  Radical SAM
 IPR008254  Flavodoxin/nitric oxide synthase
 IPR013785  Aldolase-type TIM barrel
 IPR013917  tRNA wybutosine-synthesis
 IPR029039  Flavoprotein-like superfamily
 IPR034556  S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0010181 FMN binding IEA
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051539 4 iron, 4 sulfur cluster binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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