ENSMUSG00000056310


Mus musculus

Features
Gene ID: ENSMUSG00000056310
  
Biological name :Tyw1
  
Synonyms : Q8BJM7 / tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) / Tyw1
  
Possible biological names infered from orthology : Q9NV66 / tRNA-yW synthesizing protein 1 homolog / tRNA-yW synthesizing protein 1 homolog B / TYW1B
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: G1.3
Gene start: 130255619
Gene end: 130341563
  
Corresponding Affymetrix probe sets: 10526153 (MoGene1.0st)   1426781_at (Mouse Genome 430 2.0 Array)   1446070_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000123693
Ensembl peptide - ENSMUSP00000037173
Ensembl peptide - ENSMUSP00000047318
Ensembl peptide - ENSMUSP00000098226
NCBI entrez gene - 100929     See in Manteia.
MGI - MGI:2141161
RefSeq - XM_006504331
RefSeq - XM_017320584
RefSeq - NM_001015876
RefSeq - NM_178897
RefSeq Peptide - NP_001015876
RefSeq Peptide - NP_849228
swissprot - Q8BJM7
swissprot - F6VNP0
swissprot - A0A0R4J0L2
Ensembl - ENSMUSG00000056310
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tyw1ENSDARG00000062987Danio rerio
 ENSGALG00000001110Gallus gallus
 TYW1ENSG00000198874Homo sapiens
 TYW1BENSG00000277149Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001094  Flavodoxin-like
 IPR007197  Radical SAM
 IPR008254  Flavodoxin/nitric oxide synthase
 IPR013785  Aldolase-type TIM barrel
 IPR013917  tRNA wybutosine-synthesis
 IPR029039  Flavoprotein-like superfamily
 IPR034556  S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0010181 FMN binding IEA
 molecular_functionGO:0016829 lyase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051539 4 iron, 4 sulfur cluster binding IEA
 molecular_functionGO:0102521 tRNA-4-demethylwyosine synthase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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