ENSDARG00000068587


Danio rerio

Features
Gene ID: ENSDARG00000068587
  
Biological name :rabggtb
  
Synonyms : Rab geranylgeranyltransferase, beta subunit / rabggtb
  
Possible biological names infered from orthology : P53611 / P53612 / Rab geranylgeranyl transferase, b subunit
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 26463114
Gene end: 26469093
  
Corresponding Affymetrix probe sets: Dr.15112.1.S1_at (Zebrafish Array)   NM_213112_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000114745
Ensembl peptide - ENSDARP00000090019
Ensembl peptide - ENSDARP00000090020
NCBI entrez gene - 406386     See in Manteia.
RefSeq - NM_213112
RefSeq Peptide - NP_998277
swissprot - A2CG97
swissprot - Q4V946
swissprot - Q7ZWF2
ZFIN ID - ZDB-GENE-040426-2116
Ensembl - ENSDARG00000068587
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RABGGTBENSGALG00000011388Gallus gallus
 P53611ENSG00000137955Homo sapiens
 P53612ENSMUSG00000038975Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pggt1b / protein geranylgeranyltransferase type I, beta subunit / P53609* / Q8BUY9* / Geranylgeranyl transferase type-1 subunit beta * / protein geranylgeranyltransferase type I subunit beta*ENSDARG0000010346428


Protein motifs (from Interpro)
Interpro ID Name
 IPR001330  PFTB repeat
 IPR008930  Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
 IPR026873  Geranylgeranyl transferase type-2 subunit beta


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0018344 protein geranylgeranylation IEA
 cellular_componentGO:0005968 Rab-protein geranylgeranyltransferase complex IBA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004663 Rab geranylgeranyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain
RAB geranylgeranylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0005145 muscle muscle damaged , abnormal
muscle myofibril decreased diameter , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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