ENSDARG00000068989


Danio rerio

Features
Gene ID: ENSDARG00000068989
  
Biological name :gabra1
  
Synonyms : gabra1 / gamma-aminobutyric acid (GABA) A receptor, alpha 1
  
Possible biological names infered from orthology : gamma-aminobutyric acid type A receptor alpha1 subunit / Mus musculus gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 (Gabra1), transcript variant 2, mRNA. / P14867 / P62812
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 42050351
Gene end: 42100471
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000119124
Ensembl peptide - ENSDARP00000134688
Ensembl peptide - ENSDARP00000090772
NCBI entrez gene - 768183     See in Manteia.
RefSeq - NM_001077326
RefSeq Peptide - NP_001070794
swissprot - F6P2K6
swissprot - F1R2E6
swissprot - Q08BJ3
ZFIN ID - ZDB-GENE-061013-194
Ensembl - ENSDARG00000068989
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GABRA1ENSGALG00000001698Gallus gallus
 GABRA1ENSG00000022355Homo sapiens
 Gabra1ENSMUSG00000010803Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gabra2a / gamma-aminobutyric acid type A receptor alpha2 subunit a / P47869* / GABRA2* / P26048* / Gamma-aminobutyric acid receptor subunit alpha-2 * / gamma-aminobutyric acid type A recept...ENSDARG0000009145974
gabra5 / gamma-aminobutyric acid (GABA) A receptor, alpha 5 / P31644* / Q8BHJ7* / Gamma-aminobutyric acid receptor subunit alpha-5 * / gamma-aminobutyric acid type A receptor alpha5 subunit*ENSDARG0000007073066
gabra4 / gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4 / P48169* / gamma-aminobutyric acid type A receptor alpha4 subunit*ENSDARG0000001338956
gabra6b / gamma-aminobutyric acid (GABA) A receptor, alpha 6b / GABRA6* / Q16445* / gamma-aminobutyric acid type A receptor alpha6 subunit*ENSDARG0000005873654
gabra6a / gamma-aminobutyric acid (GABA) A receptor, alpha 6a / Q16445* / GABRA6* / P16305* / Gamma-aminobutyric acid receptor subunit alpha-6 * / gamma-aminobutyric acid type A receptor al...ENSDARG0000007505848
gabra3 / gamma-aminobutyric acid (GABA) A receptor, alpha 3 / P34903* / gamma-aminobutyric acid type A receptor alpha3 subunit*ENSDARG0000009088347
gabrg2 / gamma-aminobutyric acid (GABA) A receptor, gamma 2 / P18507* / P22723* / Gamma-aminobutyric acid receptor subunit gamma-2 * / gamma-aminobutyric acid type A receptor gamma2 subunit*ENSDARG0000005366544
gabrg1 / gamma-aminobutyric acid type A receptor gamma1 subunit / Q8N1C3* / Q9R0Y8* / Gamma-aminobutyric acid receptor subunit gamma-1 *ENSDARG0000010199542
GABRA2 / gamma-aminobutyric acid type A receptor alpha2 subunit / P47869*ENSDARG0000011373732


Protein motifs (from Interpro)
Interpro ID Name
 IPR001390  Gamma-aminobutyric-acid A receptor, alpha subunit
 IPR005431  Gamma-aminobutyric-acid A receptor, alpha 1 subunit
 IPR006028  Gamma-aminobutyric acid A receptor/Glycine receptor alpha
 IPR006029  Neurotransmitter-gated ion-channel transmembrane domain
 IPR006201  Neurotransmitter-gated ion-channel
 IPR006202  Neurotransmitter-gated ion-channel ligand-binding domain
 IPR018000  Neurotransmitter-gated ion-channel, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0007214 gamma-aminobutyric acid signaling pathway IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:1902711 GABA-A receptor complex IBA
 molecular_functionGO:0004888 transmembrane signaling receptor activity IEA
 molecular_functionGO:0004890 GABA-A receptor activity IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005230 extracellular ligand-gated ion channel activity IEA


Pathways (from Reactome)
Pathway description
GABA A receptor activation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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