ENSDARG00000074148


Danio rerio

Features
Gene ID: ENSDARG00000074148
  
Biological name :rbpjl
  
Synonyms : rbpjl / recombination signal binding protein for immunoglobulin kappa J region-like
  
Possible biological names infered from orthology : O08674 / Q9UBG7
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 52757433
Gene end: 52796212
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000128811
Ensembl peptide - ENSDARP00000148148
NCBI entrez gene - 503870     See in Manteia.
RefSeq - XM_021477361
swissprot - X1WF08
ZFIN ID - ZDB-GENE-050307-4
Ensembl - ENSDARG00000074148
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBPJLENSGALG00000003952Gallus gallus
 RBPJLENSG00000124232Homo sapiens
 RbpjlENSMUSG00000017007Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbpjb / recombination signal binding protein for immunoglobulin kappa J region b / RBPJ* / Q06330* / P31266* / Recombining binding protein suppressor of hairless * / recombination signal bi...ENSDARG0000005209148
rbpja / recombination signal binding protein for immunoglobulin kappa J region a / RBPJ* / Q06330* / recombination signal binding protein for immunoglobulin kappa J region*ENSDARG0000000339848


Protein motifs (from Interpro)
Interpro ID Name
 IPR008967  p53-like transcription factor, DNA-binding
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR015350  Beta-trefoil DNA-binding domain
 IPR015351  RBP-J/Cbf11/Cbf12, DNA binding


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000982 transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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